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ecodive: Parallel and Memory-Efficient Ecological Diversity Metrics
Computes alpha and beta diversity metrics using concurrent 'C' threads. Metrics include 'UniFrac', Faith's phylogenetic diversity, Bray-Curtis dissimilarity, Shannon diversity index, and many others. Also parses newick trees into 'phylo' objects and rarefies feature tables.
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Package details |
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| Author | Daniel P. Smith [aut, cre] (ORCID: <https://orcid.org/0000-0002-2479-2044>), Alkek Center for Metagenomics and Microbiome Research [cph, fnd] |
| Maintainer | Daniel P. Smith <dansmith01@gmail.com> |
| License | MIT + file LICENSE |
| Version | 1.0.0 |
| URL | https://cmmr.github.io/ecodive/ https://github.com/cmmr/ecodive |
| Package repository | View on CRAN |
| Installation |
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