Man pages for ecospat
Spatial Ecology Miscellaneous Methods

ecospat.adj.D2Calculate An Adjusted D2
ecospat.binary.modelGenerate Binary Models
ecospat.boyceCalculate Boyce Index
ecospat.calculate.pdCalculate Phylogenetic Diversity Measures
ecospat.calevalCalibration And Evaluation Dataset
ecospat.CCV.communityEvaluation.binCalculates a range of community evaluation metrics based on...
ecospat.CCV.communityEvaluation.probEvaluates community predictions directly on the probabilities...
ecospat.CCV.createDataSplitTableCreates a DataSplitTable for usage in ecospat.ccv.modeling.
ecospat.CCV.modelingRuns indivudual species distribuion models with SDMs or ESMs
ecospat.climanA climate analogy setection tool for the modeling of species...
ecospat.cohen.kappaCohen's Kappa
ecospat.CommunityEvalCommunity Evaluation
ecospat.cons_CscoreConstrained Co-Occurrence Analysis.
ecospat.co_occurrencesSpecies Co-Occurrences
ecospat.cor.plotCorrelation Plot
ecospat.CscorePairwise co-occurrence Analysis with calculation of the...
ecospat.cv.gbmGBM Cross Validation
ecospat.cv.glmGLM Cross Validation
ecospat.cv.meMaxent Cross Validation
ecospat.cv.rfRandomForest Cross Validation
ecospat.EpredPrediction Mean
ecospat.ESM.EnsembleEvaluationEnsemble of Small Models: Evaluation via the Pooling...
ecospat.ESM.EnsembleModelingEnsemble of Small Models: Evaluates and Averages Simple...
ecospat.ESM.EnsembleProjectionEnsemble of Small Models: Projects Calibrated ESMs Into New...
ecospat.ESM.ModelingEnsemble of Small Models: Calibration of Simple Bivariate...
ecospat.ESM.ProjectionEnsemble of Small Models: Projects Simple Bivariate Models...
ecospat.ESM.responsePlotProduce response plots for ESMs
ecospat.ESM.thresholdThresholds for Ensemble of Small Models
ecospat.ESM.VarContribVariable contribution in ESM
ecospat.grid.clim.dynDynamic Occurrence Densities Grid
ecospat.mantel.correlogramMantel Correlogram
ecospat.marginDelineation of the distribution's margin and its uncertainty
ecospat.maxentvarimportMaxent Variable Importance
ecospat.max.kappaMaximum Kappa
ecospat.max.tssMaximum TSS
ecospat.mdrMinimum Dispersal Routes)
ecospat.messMESS
ecospat.meva.tableModel Evaluation For A Given Threshold Value
ecospat.mpaMinimal Predicted Area
ecospat.niche.dyn.indexNiche Pioneering, Expansion, Stability, Unfilling and...
ecospat.niche.dynIndexProjGeoProjection of niche dynamic indices to the Geography
ecospat.niche.equivalency.testNiche Equivalency Test
ecospat.nicheNBmeanNiche position and niche breadth)
ecospat.niche.overlapCalculate Niche Overlap
ecospat.nichePOSNBNiche position and niche breadth)
ecospat.niche.similarity.testNiche Similarity Test
ecospat.niche.zProjGeoProjection of Occurrence Densities to the Geography
ecospat.npredNumber Of Predictors
ecospat.occ.desaggregationSpecies Occurrences Desaggregation
ecospat.occupied.patchExtract occupied patches of a species in geographic space.)
ecospat-packageSpatial Ecology Miscellaneous Methods
ecospat.permut.glmGLM Permutation Function
ecospat.plot.contribPlot Variables Contribution
ecospat.plot.kappaPlot Kappa
ecospat.plot.messPlot MESS
ecospat.plot.nichePlot Niche
ecospat.plot.niche.dynPlot of categories of Niche dynamics and Species Density
ecospat.plot.overlap.testPlot Overlap Test
ecospat.plot.tssPlot True skill statistic (TSS)
ecospat.poolingEvaluationEvaluation of species distribution models using the pooling...
ecospat.rand.pseudoabsencesSample Pseudo-Absences
ecospat.rangesizeQuantification of the range size of a species using habitat...
ecospat.rcls.grdReclassifying grids function
ecospat.recstrat_propRandom Ecologically Stratified Sampling of propotional...
ecospat.recstrat_reglRandom Ecologically Stratified Sampling of equal numbers
ecospat.sample.envarSample Environmental Variables
ecospat.SESAM.prrSESAM Probability Ranking Rule
ecospat.shift.centroidsDraw Centroid Arrows
ecospat.testDataTest Data For The Ecospat package
ecospat.testEnvRasterTest Environmental SpatRasters for The Ecospat package
ecospat.testMdrTest Data For The ecospat.mdr function
ecospat.testNicheTest Data For The Niche Overlap Analysis
ecospat.testNiche.invTest Data For The Niche Dynamics Analysis In The Invaded...
ecospat.testNiche.natTest Data For The Niche Dynamics Analysis In The Native Range...
ecospat.testNichePOSNBTest AVS Dataset For The Ecospat package
ecospat.testTreeTest Tree For The Ecospat package
ecospat.varpartVariation Partitioning For GLM Or GAM
ecospat documentation built on July 4, 2024, 5:06 p.m.