eha: Event History Analysis

Sampling of risk sets in Cox regression, selections in the Lexis diagram, bootstrapping. Parametric proportional hazards fitting with left truncation and right censoring for common families of distributions, piecewise constant hazards, and discrete models. AFT regression for left truncated and right censored data. Binary and Poisson regression for clustered data, fixed and random effects with bootstrapping.

AuthorGöran Broström [aut, cre]
Date of publication2016-09-21 15:40:57
MaintainerGöran Broström <goran.brostrom@umu.se>
LicenseGPL (>= 2)
Version2.4-4

View on CRAN

Man pages

aftreg: Accelerated Failure Time Regression

aftreg.fit: Parametric proportional hazards regression

age.window: Age cut of survival data

cal.window: Calendar time cut of survival data

check.dist: Graphical goodness-of-fit test

check.surv: Check the integrity of survival data.

coxreg: Cox regression

coxreg.fit: Cox regression

cro: Creates a minimal representation of a data frame.

EV: The EV Distribution

fert: Marital fertility nineteenth century

geome.fit: Constant intensity discrete time proportional hazards

ghq: Gauss-Hermite

glmmboot: Generalized Linear Models with fixed effects grouping

glmmbootFit: Generalized Linear Models with fixed effects grouping

glmmML: Generalized Linear Models with random intercept

glmmML.fit: Generalized Linear Model with random intercept

Gompertz: The Gompertz Distribution

hweibull: The (Cumulative) Hazard Function of a Weibull Distribution

infants: Infant mortality and maternal death, Sweeden 1821-1894.

join.spells: Straighten up a survival data frame

Loglogistic: The Loglogistic Distribution

Lognormal: The Lognormal Distribution

logrye: Rye prices, Scania, southern Sweden, 1801-1894.

ltx: LaTeX printing of coxreg results.

make.communal: Put communals in "fixed" data frame

Makeham: The Gompertz-Makeham Distribution

male.mortality: Male mortality in ages 40-60, nineteenth century

mlreg: ML proportional hazards regression

mort: Male mortality in ages 40-60, nineteenth century

oldmort: Old age mortality, Sundsvall, Sweden, 1860-1880.

Pch: The Piecewise constant hazards (Pch) distribution

perstat: Period statistics

phfunc: Loglihood function of a proportional hazards regression

phreg: Parametric Proportional Hazards Regression

phreg.fit: Parametric proportional hazards regression

piecewise: Piecewise hazards

plot.aftreg: Plots output from an AFT regression

plot.coxreg: Plot method for 'coxreg' objects

plot.hazdata: Plots of survivor functions.

plot.phreg: Plots output from a phreg regression

plot.Surv: Plots of survivor functions.

plot.weibreg: Plots output from a Weibull regression

print.aftreg: Prints aftreg objects

print.coxreg: Prints coxreg objects

print.glmmboot: Prints a 'glmmML' object.

print.glmmML: Prints a 'glmmML' object.

print.phreg: Prints phreg objects

print.risksets: Prints a summary of the content of a set of risk sets.

print.weibreg: Prints weibreg objects

risksets: Finds the compositions and sizes of risk sets

scania: Old age mortality, Scania, southern Sweden, 1813-1894.

summary.aftreg: Prints aftreg objects

summary.coxreg: Prints coxreg objects

summary.glmmboot: Summary of a glmmboot object

summary.glmmML: Summary of a glmmML object

summary.phreg: Prints phreg objects

summary.weibreg: Prints a weibreg object

SurvSplit: Split a survival object at specified durations.

swe07: Swedish population and deaths in ages 61-80, 2007.

table.events: Calculating failure times, risk set sizes and No. of events...

toBinary: Transforms a "survival" data frame into a data frame suitable...

toDate: Convert time in years since "0000-01-01" to a date.

toTime: Calculate duration in years from "0000-01-01" to a given date

weibreg: Weibull Regression

weibreg.fit: Weibull regression

wfunk: Loglihood function of a Weibull regression

Files in this package

eha
eha/inst
eha/inst/doc
eha/inst/doc/glmmML.pdf
eha/inst/doc/parametric.Rnw
eha/inst/doc/glmmML.Rnw
eha/inst/doc/parametric.pdf
eha/src
eha/src/Makevars
eha/src/expreg.h
eha/src/expnr.f
eha/src/cleanup.f
eha/src/phfun.h
eha/src/weibreg.c
eha/src/martres.f
eha/src/loglik_phexp.c
eha/src/gmlfun.f
eha/src/aftreg.h
eha/src/fun.h
eha/src/getsums.f
eha/src/loglik_phexp.h
eha/src/eha_zeroin.c
eha/src/glmmboot.c
eha/src/glmmb0.c
eha/src/loglik_ph.h
eha/src/frail_ml.c
eha/src/glmmml.h
eha/src/aftregGomp.c
eha/src/eha_fun.c
eha/src/geomsup.f
eha/src/eha_fun.h
eha/src/bfun.c
eha/src/glmmml.c
eha/src/glmmboot.h
eha/src/wfunc.null.f
eha/src/ghq.h
eha/src/fun.c
eha/src/coxfun.h
eha/src/getsums.null.f
eha/src/aftexpreg.c
eha/src/bfun.h
eha/src/wfunc.f
eha/src/sizes.c
eha/src/weibreg.h
eha/src/frail_ml.h
eha/src/loglik_ph.c
eha/src/c2f.c
eha/src/phexpreg.c
eha/src/risk.c
eha/src/weibnr.f
eha/src/coxfun.c
eha/src/expreg.c
eha/src/GB_zeroin.h
eha/src/hazards.f
eha/src/eha_zeroin.h
eha/src/phfun.c
eha/src/sup.c
eha/src/GB_zeroin.c
eha/src/split.f
eha/src/chek.f
eha/src/getHaz.f
eha/src/phreg.c
eha/src/phreg.h
eha/src/sup.h
eha/src/aftreg.c
eha/src/ghq.f
eha/NAMESPACE
eha/data
eha/data/mort.rda
eha/data/oldmort.rda
eha/data/infants.rda
eha/data/logrye.rda
eha/data/fert.rda
eha/data/male.mortality.rda
eha/data/swe07.rda
eha/data/scania.rda
eha/R
eha/R/plot.hazdata.R eha/R/glmmML.R eha/R/summary.glmmML.R eha/R/summary.glmmboot.R eha/R/poisgam.R eha/R/Makeham.R eha/R/phreg.fit.R eha/R/summary.aftreg.R eha/R/make.communal.R eha/R/piecewise.R eha/R/glmmML.fit.R eha/R/plot.surv.R eha/R/toTime.R eha/R/perstat.R eha/R/join.spells.R eha/R/cal.window.R eha/R/print.phreg.R eha/R/SurvSplit.R eha/R/print.pchreg.R eha/R/Gompertz.R eha/R/geome.fit.R eha/R/gompstartRate.R eha/R/phreg.R eha/R/gompregRate.R eha/R/plot.coxreg.R eha/R/print.glmmboot.R eha/R/check.dist.R eha/R/toBinary.R eha/R/translifeExp.R eha/R/aftp0g.R eha/R/aftp1.R eha/R/frail.fit.R eha/R/age.window.R eha/R/gompstartCanonical.R eha/R/weibreg.R eha/R/gompstartAft.R eha/R/check.surv.R eha/R/cumhweibull.R eha/R/print.glmmML.R eha/R/print.risksets.R eha/R/phfunc.R eha/R/gompreg.R eha/R/coxreg.R eha/R/risksets.R eha/R/pchreg.R eha/R/aftreg.R eha/R/toDate.R eha/R/ghq.R eha/R/print.aftreg.R eha/R/plot.hazards.R eha/R/pchreg2.R eha/R/plot.phreg.R eha/R/weibreg.fit.R eha/R/wfunk.R eha/R/ltx.phreg.R eha/R/cro.R eha/R/getHaz.R eha/R/extract.R eha/R/summary.phreg.R eha/R/aftreg.fit.R eha/R/Lognormal.R eha/R/plot.weibreg.R eha/R/print.coxreg.R eha/R/plot.aftreg.R eha/R/Pch.R eha/R/coxreg.fit.R eha/R/ltx.R eha/R/aftp0.R eha/R/summary.weibreg.R eha/R/ltx.coxreg.R eha/R/Extreme_Value.R eha/R/Loglogistic.R eha/R/addMeans.R eha/R/print.weibreg.R eha/R/ltx.aftreg.R eha/R/table.events.R eha/R/summary.coxreg.R eha/R/glmmboot.R eha/R/Weibull.R eha/R/glmmMLBoot.R eha/R/mlreg.R
eha/vignettes
eha/vignettes/parametric.Rnw
eha/vignettes/glmmML.Rnw
eha/vignettes/cluster.bib
eha/MD5
eha/build
eha/build/vignette.rds
eha/DESCRIPTION
eha/ChangeLog
eha/man
eha/man/risksets.Rd eha/man/make.communal.Rd eha/man/male.mortality.Rd eha/man/cal.window.Rd eha/man/summary.glmmboot.Rd eha/man/plot.phreg.Rd eha/man/Loglogistic.Rd eha/man/cro.Rd eha/man/summary.coxreg.Rd eha/man/Pch.Rd eha/man/oldmort.Rd eha/man/mort.Rd eha/man/ghq.Rd eha/man/logrye.Rd eha/man/Gompertz.Rd eha/man/summary.aftreg.Rd eha/man/EV.Rd eha/man/join.spells.Rd eha/man/Makeham.Rd eha/man/ltx.Rd eha/man/aftreg.Rd eha/man/weibreg.Rd eha/man/summary.weibreg.Rd eha/man/glmmML.Rd eha/man/print.coxreg.Rd eha/man/summary.glmmML.Rd eha/man/phfunc.Rd eha/man/phreg.fit.Rd eha/man/print.weibreg.Rd eha/man/glmmboot.Rd eha/man/glmmbootFit.Rd eha/man/print.risksets.Rd eha/man/geome.fit.Rd eha/man/glmmML.fit.Rd eha/man/check.dist.Rd eha/man/piecewise.Rd eha/man/print.glmmML.Rd eha/man/toDate.Rd eha/man/weibreg.fit.Rd eha/man/coxreg.fit.Rd eha/man/wfunk.Rd eha/man/plot.aftreg.Rd eha/man/hweibull.Rd eha/man/fert.Rd eha/man/print.glmmboot.Rd eha/man/mlreg.Rd eha/man/plot.hazdata.Rd eha/man/SurvSplit.Rd eha/man/plot.Surv.Rd eha/man/coxreg.Rd eha/man/scania.Rd eha/man/phreg.Rd eha/man/age.window.Rd eha/man/plot.weibreg.Rd eha/man/swe07.Rd eha/man/perstat.Rd eha/man/print.phreg.Rd eha/man/summary.phreg.Rd eha/man/check.surv.Rd eha/man/print.aftreg.Rd eha/man/aftreg.fit.Rd eha/man/toTime.Rd eha/man/Lognormal.Rd eha/man/infants.Rd eha/man/table.events.Rd eha/man/toBinary.Rd eha/man/plot.coxreg.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.