eha: Event History Analysis
Version 2.4-5

Sampling of risk sets in Cox regression, selections in the Lexis diagram, bootstrapping. Parametric proportional hazards fitting with left truncation and right censoring for common families of distributions, piecewise constant hazards, and discrete models. AFT regression for left truncated and right censored data. Binary and Poisson regression for clustered data, fixed and random effects with bootstrapping.

AuthorGöran Broström [aut, cre]
Date of publication2017-05-03 07:10:20 UTC
MaintainerGöran Broström <goran.brostrom@umu.se>
LicenseGPL (>= 2)
Version2.4-5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("eha")

Popular man pages

aftreg.fit: Parametric proportional hazards regression
Loglogistic: The Loglogistic Distribution
Makeham: The Gompertz-Makeham Distribution
plot.phreg: Plots output from a phreg regression
SurvSplit: Split a survival object at specified durations.
weibreg: Weibull Regression
weibreg.fit: Weibull regression
See all...

All man pages Function index File listing

Man pages

aftreg: Accelerated Failure Time Regression
aftreg.fit: Parametric proportional hazards regression
age.window: Age cut of survival data
cal.window: Calendar time cut of survival data
check.dist: Graphical goodness-of-fit test
check.surv: Check the integrity of survival data.
coxreg: Cox regression
coxreg.fit: Cox regression
cro: Creates a minimal representation of a data frame.
EV: The EV Distribution
fert: Marital fertility nineteenth century
geome.fit: Constant intensity discrete time proportional hazards
ghq: Gauss-Hermite
glmmboot: Generalized Linear Models with fixed effects grouping
glmmbootFit: Generalized Linear Models with fixed effects grouping
glmmML: Generalized Linear Models with random intercept
glmmML.fit: Generalized Linear Model with random intercept
Gompertz: The Gompertz Distribution
hweibull: The (Cumulative) Hazard Function of a Weibull Distribution
infants: Infant mortality and maternal death, Sweeden 1821-1894.
join.spells: Straighten up a survival data frame
Loglogistic: The Loglogistic Distribution
Lognormal: The Lognormal Distribution
logrye: Rye prices, Scania, southern Sweden, 1801-1894.
ltx: LaTeX printing of coxreg results.
make.communal: Put communals in "fixed" data frame
Makeham: The Gompertz-Makeham Distribution
male.mortality: Male mortality in ages 40-60, nineteenth century
mlreg: ML proportional hazards regression
mort: Male mortality in ages 40-60, nineteenth century
oldmort: Old age mortality, Sundsvall, Sweden, 1860-1880.
Pch: The Piecewise constant hazards (Pch) distribution
perstat: Period statistics
phfunc: Loglihood function of a proportional hazards regression
phreg: Parametric Proportional Hazards Regression
phreg.fit: Parametric proportional hazards regression
piecewise: Piecewise hazards
plot.aftreg: Plots output from an AFT regression
plot.coxreg: Plot method for 'coxreg' objects
plot.hazdata: Plots of survivor functions.
plot.phreg: Plots output from a phreg regression
plot.Surv: Plots of survivor functions.
plot.weibreg: Plots output from a Weibull regression
print.aftreg: Prints aftreg objects
print.coxreg: Prints coxreg objects
print.glmmboot: Prints a 'glmmML' object.
print.glmmML: Prints a 'glmmML' object.
print.phreg: Prints phreg objects
print.risksets: Prints a summary of the content of a set of risk sets.
print.weibreg: Prints weibreg objects
risksets: Finds the compositions and sizes of risk sets
scania: Old age mortality, Scania, southern Sweden, 1813-1894.
summary.aftreg: Prints aftreg objects
summary.coxreg: Prints coxreg objects
summary.glmmboot: Summary of a glmmboot object
summary.glmmML: Summary of a glmmML object
summary.phreg: Prints phreg objects
summary.weibreg: Prints a weibreg object
SurvSplit: Split a survival object at specified durations.
swe07: Swedish population and deaths in ages 61-80, 2007.
table.events: Calculating failure times, risk set sizes and No. of events...
toBinary: Transforms a "survival" data frame into a data frame suitable...
toDate: Convert time in years since "0000-01-01" to a date.
toTime: Calculate duration in years from "0000-01-01" to a given date
weibreg: Weibull Regression
weibreg.fit: Weibull regression
wfunk: Loglihood function of a Weibull regression

Functions

EV Man page
Gompertz Man page
HEV Man page Source code
Hgompertz Man page Source code
Hllogis Man page Source code
Hlnorm Man page Source code
Hmakeham Man page Source code
Hpch Man page Source code
Hweibull Man page Source code Source code
Llogis Man page
Lnorm Man page
Makeham Man page
SurvSplit Man page Source code
addMeans Source code
aftp0 Source code
aftp0g Source code
aftp1 Source code
aftreg Man page Source code
aftreg.fit Man page Source code
age.window Man page Source code
cal.window Man page Source code
check.dist Man page Source code
check.surv Man page Source code
coxreg Man page Source code
coxreg.fit Man page Source code
cro Man page Source code
dEV Man page Source code
dgompertz Man page Source code
dllogis Man page Source code
dmakeham Man page Source code
dpch Man page Source code
extractAIC.aftreg Source code
extractAIC.coxreg Source code
extractAIC.glmmML Source code
extractAIC.glmmboot Source code
extractAIC.phreg Source code
fert Man page
frail.fit Source code
geome.fit Man page Source code
getHaz Source code
ghq Man page Source code
glmmML Man page Source code
glmmML.fit Man page Source code
glmmboot Man page Source code
glmmbootFit Man page Source code
gompreg Source code
gompregRate Source code
gompstartAft Source code
gompstartCanonical Source code
gompstartRate Source code
hEV Man page Source code
hgompertz Man page Source code
hllogis Man page Source code
hlnorm Man page Source code
hmakeham Man page Source code
hpch Man page Source code
hweibull Man page Source code
infants Man page
join.spells Man page Source code
logrye Man page
ltx Man page Source code
ltx.aftreg Source code
ltx.coxreg Source code
ltx.phreg Source code
make.communal Man page Source code
male.mortality Man page
mlreg Man page Source code
mort Man page
nobs.aftreg Source code
nobs.coxreg Source code
nobs.glmmML Source code
nobs.glmmboot Source code
nobs.phreg Source code
oldmort Man page
pEV Man page Source code
pch Man page
pchreg Source code
pchreg2 Source code
perstat Man page Source code
pgompertz Man page Source code
phfunc Man page Source code
phreg Man page Source code
phreg.fit Man page Source code
piecewise Man page Source code
pllogis Man page Source code
plot.Surv Man page Source code
plot.aftreg Man page Source code
plot.coxreg Man page Source code
plot.hazards Source code
plot.hazdata Man page Source code
plot.phreg Man page Source code
plot.weibreg Man page Source code
pmakeham Man page Source code
poisgam Source code
ppch Man page Source code
print.aftreg Man page Source code
print.coxreg Man page Source code
print.glmmML Man page Source code
print.glmmboot Man page Source code
print.pchreg Source code
print.phreg Man page Source code
print.risksets Man page Source code
print.weibreg Man page Source code
qEV Man page Source code
qgompertz Man page Source code
qllogis Man page Source code
qmakeham Man page Source code
qpch Man page Source code
rEV Man page Source code
rgompertz Man page Source code
risksets Man page Source code
rllogis Man page Source code
rmakeham Man page Source code
rpch Man page Source code
scania Man page
summary.aftreg Man page Source code
summary.coxreg Man page Source code
summary.glmmML Man page Source code
summary.glmmboot Man page Source code
summary.phreg Man page Source code
summary.weibreg Man page Source code
swe07 Man page
table.events Man page Source code
toBinary Man page Source code
toDate Man page Source code
toTime Man page Source code
translifeExp Source code
weibreg Man page Source code
weibreg.fit Man page Source code
wfunk Man page Source code

Files

inst
inst/doc
inst/doc/glmmML.pdf
inst/doc/parametric.Rnw
inst/doc/glmmML.Rnw
inst/doc/parametric.pdf
src
src/Makevars
src/expreg.h
src/expnr.f
src/cleanup.f
src/phfun.h
src/weibreg.c
src/martres.f
src/loglik_phexp.c
src/gmlfun.f
src/aftreg.h
src/fun.h
src/getsums.f
src/loglik_phexp.h
src/eha_zeroin.c
src/glmmboot.c
src/glmmb0.c
src/loglik_ph.h
src/frail_ml.c
src/glmmml.h
src/aftregGomp.c
src/eha_fun.c
src/geomsup.f
src/eha_fun.h
src/bfun.c
src/glmmml.c
src/glmmboot.h
src/wfunc.null.f
src/ghq.h
src/fun.c
src/coxfun.h
src/getsums.null.f
src/aftexpreg.c
src/bfun.h
src/wfunc.f
src/sizes.c
src/weibreg.h
src/frail_ml.h
src/loglik_ph.c
src/c2f.c
src/phexpreg.c
src/risk.c
src/weibnr.f
src/coxfun.c
src/expreg.c
src/GB_zeroin.h
src/hazards.f
src/init.c
src/eha_zeroin.h
src/phfun.c
src/sup.c
src/GB_zeroin.c
src/split.f
src/chek.f
src/getHaz.f
src/phreg.c
src/phreg.h
src/sup.h
src/aftreg.c
src/ghq.f
NAMESPACE
data
data/mort.rda
data/oldmort.rda
data/infants.rda
data/logrye.rda
data/fert.rda
data/male.mortality.rda
data/swe07.rda
data/scania.rda
R
R/plot.hazdata.R
R/glmmML.R
R/summary.glmmML.R
R/summary.glmmboot.R
R/poisgam.R
R/Makeham.R
R/phreg.fit.R
R/summary.aftreg.R
R/make.communal.R
R/piecewise.R
R/glmmML.fit.R
R/plot.surv.R
R/toTime.R
R/perstat.R
R/join.spells.R
R/cal.window.R
R/print.phreg.R
R/SurvSplit.R
R/print.pchreg.R
R/Gompertz.R
R/geome.fit.R
R/gompstartRate.R
R/phreg.R
R/gompregRate.R
R/plot.coxreg.R
R/print.glmmboot.R
R/check.dist.R
R/toBinary.R
R/translifeExp.R
R/aftp0g.R
R/aftp1.R
R/frail.fit.R
R/age.window.R
R/gompstartCanonical.R
R/weibreg.R
R/gompstartAft.R
R/check.surv.R
R/cumhweibull.R
R/print.glmmML.R
R/print.risksets.R
R/phfunc.R
R/gompreg.R
R/coxreg.R
R/risksets.R
R/pchreg.R
R/aftreg.R
R/toDate.R
R/ghq.R
R/print.aftreg.R
R/plot.hazards.R
R/pchreg2.R
R/plot.phreg.R
R/weibreg.fit.R
R/wfunk.R
R/ltx.phreg.R
R/cro.R
R/getHaz.R
R/extract.R
R/summary.phreg.R
R/aftreg.fit.R
R/Lognormal.R
R/plot.weibreg.R
R/print.coxreg.R
R/plot.aftreg.R
R/Pch.R
R/coxreg.fit.R
R/ltx.R
R/aftp0.R
R/summary.weibreg.R
R/ltx.coxreg.R
R/Extreme_Value.R
R/Loglogistic.R
R/addMeans.R
R/print.weibreg.R
R/ltx.aftreg.R
R/table.events.R
R/summary.coxreg.R
R/glmmboot.R
R/Weibull.R
R/glmmMLBoot.R
R/mlreg.R
vignettes
vignettes/parametric.Rnw
vignettes/glmmML.Rnw
vignettes/cluster.bib
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/risksets.Rd
man/make.communal.Rd
man/male.mortality.Rd
man/cal.window.Rd
man/summary.glmmboot.Rd
man/plot.phreg.Rd
man/Loglogistic.Rd
man/cro.Rd
man/summary.coxreg.Rd
man/Pch.Rd
man/oldmort.Rd
man/mort.Rd
man/ghq.Rd
man/logrye.Rd
man/Gompertz.Rd
man/summary.aftreg.Rd
man/EV.Rd
man/join.spells.Rd
man/Makeham.Rd
man/ltx.Rd
man/aftreg.Rd
man/weibreg.Rd
man/summary.weibreg.Rd
man/glmmML.Rd
man/print.coxreg.Rd
man/summary.glmmML.Rd
man/phfunc.Rd
man/phreg.fit.Rd
man/print.weibreg.Rd
man/glmmboot.Rd
man/glmmbootFit.Rd
man/print.risksets.Rd
man/geome.fit.Rd
man/glmmML.fit.Rd
man/check.dist.Rd
man/piecewise.Rd
man/print.glmmML.Rd
man/toDate.Rd
man/weibreg.fit.Rd
man/coxreg.fit.Rd
man/wfunk.Rd
man/plot.aftreg.Rd
man/hweibull.Rd
man/fert.Rd
man/print.glmmboot.Rd
man/mlreg.Rd
man/plot.hazdata.Rd
man/SurvSplit.Rd
man/plot.Surv.Rd
man/coxreg.Rd
man/scania.Rd
man/phreg.Rd
man/age.window.Rd
man/plot.weibreg.Rd
man/swe07.Rd
man/perstat.Rd
man/print.phreg.Rd
man/summary.phreg.Rd
man/check.surv.Rd
man/print.aftreg.Rd
man/aftreg.fit.Rd
man/toTime.Rd
man/Lognormal.Rd
man/infants.Rd
man/table.events.Rd
man/toBinary.Rd
man/plot.coxreg.Rd
eha documentation built on May 20, 2017, 1:22 a.m.

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