emdbook: Support Functions and Data for "Ecological Models and Data"

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Auxiliary functions and data sets for "Ecological Models and Data", a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0).

Author
Ben Bolker
Date of publication
2016-02-11 16:43:09
Maintainer
Ben Bolker <bolker@mcmaster.ca>
License
GPL
Version
1.3.9
URLs

View on CRAN

Man pages

apply2d
Apply a function to a combination of vectors
as.mcmc.bugs
Convert WinBUGS output to CODA format
calcslice
Negative log-likelihood slice
contour3d
Superimpose contour lines on a 3D plot
credint
Calculate Bayesian credible intervals
curve3d
Plot a 3D surface representing a 2D curve
Damsel
Reef fish (damselfish) data
dbetabinom
Beta-binomial distribution
dchibarsq
Mixed chi-squared distributions
deltamethod
Delta method functions
deprecated
Deprecated (obsolete) functions
dmvnorm
Multivariate normal distribution density function
dzinbinom
Zero-inflated negative binomial distribution
emdbook.package
ecological models and data
Fir
Data on fir (Abies) life history
get.emdbook.packages
install and update auxiliary packages
GobySurvival
Goby (reef fish) survivorship data
gridsearch2d
Graphical grid search in 2D
HPDregionplot
Plot highest posterior density region
lambertW
Lambert W function
Lily
Glacier lily occurrence and fecundity data
lseq
Log-spaced sequence
lump.mcmc.list
Utility functions for mcmc objects
metropSB
Metropolis-Szymura-Barton algorithm
Myxo
Myxomatosis titer data
perturb.params
Create a list of perturbed parameters
Reedfrog
Data on reed frog predation experiments
scinot
Scientific notation as LaTeX/expression()
SeedPred
Seed predation data set from Duncan and Duncan 2000
trcoef
Transform coefficients

Files in this package

emdbook
emdbook/inst
emdbook/inst/BUGS
emdbook/inst/BUGS/trees.bug
emdbook/inst/BUGS/frogpred.bug
emdbook/inst/BUGS/negbinom.bug
emdbook/inst/BUGS/testmyxo.bug
emdbook/inst/BUGS/myxo1.bug
emdbook/inst/BUGS/firfec2.bug
emdbook/inst/BUGS/statespace.bug
emdbook/inst/BUGS/firfec0.bug
emdbook/inst/BUGS/Owls.dat
emdbook/inst/BUGS/firfec1.bug
emdbook/inst/BUGS/gammanorm.bug
emdbook/inst/BUGS/Owls.RData
emdbook/inst/BUGS/myxogamma.bug
emdbook/inst/BUGS/reefgobysurv.bug
emdbook/inst/CITATION
emdbook/inst/misc
emdbook/inst/misc/firfec-batch.R
emdbook/inst/NEWS.Rd
emdbook/NAMESPACE
emdbook/data
emdbook/data/ReedfrogPred.rda
emdbook/data/DamselRecruitment_sum.tab.gz
emdbook/data/MyxoTiter_sum.tab.gz
emdbook/data/SeedPred.rda
emdbook/data/SeedPred_wide.rda
emdbook/data/ReedfrogFuncresp.tab.gz
emdbook/data/FirDBHFec_sum.tab.gz
emdbook/data/FirDBHFec.csv.gz
emdbook/data/Lily_sum.csv.gz
emdbook/data/DamselRecruitment.tab.gz
emdbook/data/ReedfrogSizepred.tab.gz
emdbook/data/DamselSettlement.tab.gz
emdbook/data/SeedPred_mass.rda
emdbook/R
emdbook/R/dists.R
emdbook/R/lambertW.R
emdbook/R/utils3d.R
emdbook/R/bayes.R
emdbook/R/emdbook.R
emdbook/MD5
emdbook/DESCRIPTION
emdbook/man
emdbook/man/gridsearch2d.Rd
emdbook/man/credint.Rd
emdbook/man/Damsel.Rd
emdbook/man/calcslice.Rd
emdbook/man/perturb.params.Rd
emdbook/man/lambertW.Rd
emdbook/man/emdbook.package.Rd
emdbook/man/as.mcmc.bugs.Rd
emdbook/man/deprecated.Rd
emdbook/man/lseq.Rd
emdbook/man/scinot.Rd
emdbook/man/Lily.Rd
emdbook/man/SeedPred.Rd
emdbook/man/get.emdbook.packages.Rd
emdbook/man/HPDregionplot.Rd
emdbook/man/apply2d.Rd
emdbook/man/Myxo.Rd
emdbook/man/dchibarsq.Rd
emdbook/man/Reedfrog.Rd
emdbook/man/Fir.Rd
emdbook/man/contour3d.Rd
emdbook/man/dbetabinom.Rd
emdbook/man/deltamethod.Rd
emdbook/man/metropSB.Rd
emdbook/man/GobySurvival.Rd
emdbook/man/dzinbinom.Rd
emdbook/man/lump.mcmc.list.Rd
emdbook/man/curve3d.Rd
emdbook/man/dmvnorm.Rd
emdbook/man/trcoef.Rd