enaR: Tools for Ecological Network Analysis

Provides algorithms for the analysis of ecological networks.

Author
M.K. Lau, S.R. Borrett, D.E. Hines, P. Singh
Date of publication
2015-08-07 09:01:12
Maintainer
Matthew K. Lau <enaR.maintainer@gmail.com>
License
GPL-3
Version
2.9.1
URLs

View on CRAN

Man pages

as.bipartite
Create a bipartite network.
as.extended
Create an Extended Format Matrix
bal
Subfunction for Balancing by Either Inputs or Outputs
balance
Balance Flow Network Models
bcratio
Calculates the Ratio of Positive to Negative Elements in a...
bgcModels
Bigeochemical Cycling Models
cycliv
Analysis of Feeding Cycles in a Network
eigenCentrality
Calculates the Eigen Centrality of a Network
enaAll
Conduct All Major ENA
enaAscendency
Calculates the Ascendency of an Ecological Network
enaControl
Control Analyses of Ecological Networks
enaCycle
Full Cycle Analysis of Ecological Networks
enaEnviron
Ecological Network Environs
enaFlow
Flow Analyses of Ecological Networks
enaModelInfo
Ecosystem Model Information
enaModels
Ecosystem Models
enaMTI
Mixed Trophic Impacts (MTI) Analysis
enaR-package
Tools for Ecological Network Analysis (ena)
enaStorage
Storage Analyses of Ecological Networks
enaStructure
Structure Analyses of Ecological Network
enaTroAgg
Trophic Aggregations (TroAgg) Analysis
enaUtility
Utility Analysis of Ecological Networks
environCentrality
Environ Centrality an Ecological Network
findPathLength
Cumulative Flow over a Range of Path Lengths
force.balance
Repeated Application the Balance Function
get.ns
Quick Calculation of a Range of Network Statistics.
get.orient
Get the Current Global Matrix Orientation Setting
mExp
Calculates the Exponent of a Matrix
m.list
Sub-set of the Larger Ecosystem Models
netOrder
Reorder Nodes in a Network in enaR
oyster
Intertidal Oyster Reef Ecosystem Model
pack
Compile Network Information into a Network Class
read.enam
Read ENA Model from an Mdloti Formatted Excel File
read.nea
Read NEA Formatted Network Model
read.scor
Read SCOR Formatted Model
read.wand
Read WAND Formatted Model
scc
Find the Strongly Connected Component (SCC) in a Graph
scifix
Standardizes Scientific Notation from SCOR Formatted Files
set.orient
Globally Set the Output Matrix Orientation
ssCheck
Checks the Balance of Inputs and Outputs from a Network
structure.statistics
Structural Statistics of an Ecological Network
TES
Calculate the Total Environ Storage
TET
Calculates the Total Environ Throughflow for a Ecosystem...
troModels
Trophic Models
unpack
"Unpacks" the Network Object into Separate Objects
write.EcoNet
Write enaR models to an EcoNet formatted file.
write.nea
Write a Network Object to File Using the NEA Data Format

Files in this package

enaR
enaR/inst
enaR/inst/doc
enaR/inst/doc/enaR-vignette.pdf.asis
enaR/inst/doc/enaR-vignette.pdf
enaR/NAMESPACE
enaR/data
enaR/data/enaModelInfo.rda
enaR/data/oyster.rda
enaR/data/enaModels.rda
enaR/data/troModels.rda
enaR/data/bgcModels.rda
enaR/R
enaR/R/balance.R
enaR/R/unpack.R
enaR/R/read.wand.R
enaR/R/environCentrality.R
enaR/R/bal.R
enaR/R/read.scor.R
enaR/R/as.extended.R
enaR/R/findPathLength.R
enaR/R/pack.R
enaR/R/scc.R
enaR/R/scifix.R
enaR/R/structure.statistics.R
enaR/R/enaFlow.R
enaR/R/TET.R
enaR/R/write.EcoNet.R
enaR/R/ssCheck.R
enaR/R/enaAscendency.R
enaR/R/read.nea.R
enaR/R/eigenCentrality.R
enaR/R/as.bipartite.R
enaR/R/bcratio.R
enaR/R/enaStructure.R
enaR/R/enaUtility.R
enaR/R/cycliv.R
enaR/R/get.ns.R
enaR/R/netOrder.R
enaR/R/read.enam.R
enaR/R/enaControl.R
enaR/R/enaMTI.R
enaR/R/set.orient.R
enaR/R/enaEnviron.R
enaR/R/enaStorage.R
enaR/R/get.orient.R
enaR/R/enaAll.R
enaR/R/mExp.R
enaR/R/enaCycle.R
enaR/R/enaTroAgg.R
enaR/R/write.nea.R
enaR/R/TES.R
enaR/R/force.balance.R
enaR/vignettes
enaR/vignettes/enaR-vignette.pdf.asis
enaR/MD5
enaR/build
enaR/build/vignette.rds
enaR/DESCRIPTION
enaR/man
enaR/man/force.balance.Rd
enaR/man/TES.Rd
enaR/man/structure.statistics.Rd
enaR/man/oyster.Rd
enaR/man/read.enam.Rd
enaR/man/cycliv.Rd
enaR/man/pack.Rd
enaR/man/eigenCentrality.Rd
enaR/man/enaFlow.Rd
enaR/man/bgcModels.Rd
enaR/man/set.orient.Rd
enaR/man/findPathLength.Rd
enaR/man/enaControl.Rd
enaR/man/enaModels.Rd
enaR/man/enaStructure.Rd
enaR/man/scc.Rd
enaR/man/read.scor.Rd
enaR/man/enaUtility.Rd
enaR/man/read.wand.Rd
enaR/man/write.nea.Rd
enaR/man/enaCycle.Rd
enaR/man/bcratio.Rd
enaR/man/read.nea.Rd
enaR/man/netOrder.Rd
enaR/man/enaEnviron.Rd
enaR/man/enaStorage.Rd
enaR/man/TET.Rd
enaR/man/get.orient.Rd
enaR/man/enaTroAgg.Rd
enaR/man/enaAll.Rd
enaR/man/ssCheck.Rd
enaR/man/as.extended.Rd
enaR/man/write.EcoNet.Rd
enaR/man/m.list.Rd
enaR/man/troModels.Rd
enaR/man/mExp.Rd
enaR/man/environCentrality.Rd
enaR/man/scifix.Rd
enaR/man/as.bipartite.Rd
enaR/man/enaAscendency.Rd
enaR/man/balance.Rd
enaR/man/enaMTI.Rd
enaR/man/enaR-package.Rd
enaR/man/bal.Rd
enaR/man/unpack.Rd
enaR/man/enaModelInfo.Rd
enaR/man/get.ns.Rd