enaR: Tools for Ecological Network Analysis

Provides algorithms for the analysis of ecological networks.

Install the latest version of this package by entering the following in R:
install.packages("enaR")
AuthorM.K. Lau, S.R. Borrett, D.E. Hines, P. Singh
Date of publication2017-03-11 09:18:35
MaintainerMatthew K. Lau <enaR.maintainer@gmail.com>
LicenseGPL-3
Version2.10.0
https://github.com/SEELab/enaR

View on CRAN

Man pages

as.bipartite: as.bipartite - convert a network object to a matrix for...

as.extended: as.extended - convert a network object to extended format in...

bal: bal - balances a flow model INPUT = network model in extended...

balance: Balance Flow Network Models

bcratio: Calculates the Ratio of Positive to Negative Elements in a...

bgcModels: Bigeochemical Cycling Models

cycliv: ## Cycle Analysis for Feeding Cycles ## Singh P. | July 2014...

EcoNetWeb: ### MKLau 31Mar2016 Access example EcoNet models from the...

eigenCentrality: Calculates the Eigen Centrality of a Network

enaAll: enaAll - Conduct all ecological network analyses INPUT =...

enaAscendency: enaAscendency - calculates the ascendency statistics of...

enaControl: enaControl - control analyses INPUT = network object OUTPUT =...

enaCycle: ## NETWRK's Full Cycle Analysis ## Singh P. | July 2014 ##...

enaEnviron: environ - conducts environ analysis INPUT = network object...

enaFlow: enaFlow - flow analysis INPUT = network object OUTPUT = list...

enaModelInfo: Ecosystem Model Information

enaModels: Ecosystem Models

enaMTI: enaMTI - Mixed Trophic Impacts Analysis follows Ulanowicz and...

enaR-package: Tools for Ecological Network Analysis (ena)

enaStorage: enaStorage - storage analysis INPUT = network object OUTPUT =...

enaStructure: enaStructure - performes strucutral analysis of the network...

enaTroAgg: Trophic Aggregations (TroAgg) Analysis

enaUtility: enautility - utility analysis of a flow network INPUT =...

environCentrality: environCentrality - calculates the centrality of flow network...

findPathLength: findPathLength - calculates the flows over a sequence up to a...

force.balance: force.balance - repeatedly applies balance until...

get.ns: get.ns.R Input = network model Output = a vector of global...

get.orient: get.orient - returns the global orientation INPUT = none...

mExp: # mExp - calculate the exponent of a given matrix # INPUT = a...

m.list: Sub-set of the Larger Ecosystem Models

netOrder: ## Function to order the nodes in a Network in enaR ## Singh...

oyster: Intertidal Oyster Reef Ecosystem Model

pack: Compile Network Information into a Network Class

read.EcoNet: ### MKLau 1Mar2016 Read an EcoNet model.

read.enam: R function to read in a matrix formatted as Mdloti (Ursula...

read.nea: read.nea.RData INPUT = Model Data (flows, inputs, outputs,...

read.scor: read.scor - SCOR formatted file into R in multiple formats...

read.wand: read.wand - WAND formatted file into R INPUT = file path...

relationalChange: Relational change compared between two matrices.

scc: scc - find the strongly connected component INPUT = an...

scifix: scifix - corrects missing e or E in scientific notation INPUT...

set.orient: set.orient - globally reorients matrices INPUT = matrix...

ShannonDiversity: Shannon Diversity Metrics These are based on entropy and...

signs: Signs and summary of input matrix

ssCheck: ssCheck - checks if the given network is out of balance by a...

structure.statistics: structure.statistics - calculates structural statistics INPUT...

TES: TES.R - TOTAL ENVIRON STORAGE INPUT = network model OUTPUT =...

TET: TET.R - TOTAL ENVIRON THROUGHFLOW INPUT = network model...

troModels: Trophic Models

unpack: unpack - extracts network object into a list INPUT = network...

write.EcoNet: ### MKLau 17nov2014 Write enaR models to an EcoNet formatted...

write.nea: ' write.nea.R INPUT = enaR network data object Ouput = CSV...

Functions

as.bipartite Man page
as.extended Man page
bal Man page
balance Man page
bcratio Man page
bgcModels Man page
cycliv Man page
EcoNetWeb Man page
eigenCentrality Man page
enaAll Man page
enaAscendency Man page
enaControl Man page
enaCycle Man page
enaEnviron Man page
enaFlow Man page
enaModelInfo Man page
enaModels Man page
enaMTI Man page
enaR Man page
enaR-package Man page
enaStorage Man page
enaStructure Man page
enaTroAgg Man page
enaUtility Man page
environCentrality Man page
findPathLength Man page
force.balance Man page
get.ns Man page
get.orient Man page
mExp Man page
m.list Man page
netOrder Man page
oyster Man page
pack Man page
read.EcoNet Man page
read.enam Man page
read.nea Man page
read.scor Man page
read.wand Man page
relationalChange Man page
scc Man page
scifix Man page
set.orient Man page
ShannonDiversity Man page
signs Man page
ssCheck Man page
structure.statistics Man page
TES Man page
TET Man page
troModels Man page
unpack Man page
write.EcoNet Man page
write.nea Man page

Files

inst
inst/doc
inst/doc/enaR-vignette.pdf.asis
inst/doc/enaR-vignette.pdf
NAMESPACE
CHANGELOG
data
data/enaModelInfo.rda
data/oyster.rda
data/enaModels.rda
data/troModels.rda
data/bgcModels.rda
R
R/balance.R R/unpack.R R/read.wand.R R/environCentrality.R R/bal.R R/EcoNetWeb.R R/read.scor.R R/as.extended.R R/findPathLength.R R/ShannonDiversity.R R/pack.R R/enaR-package.R R/scc.R R/scifix.R R/structure.statistics.R R/enaFlow.R R/TET.R R/write.EcoNet.R R/relationalChange.r R/ssCheck.R R/signs.r R/enaAscendency.R R/read.nea.R R/eigenCentrality.R R/as.bipartite.R R/bcratio.R R/enaStructure.R R/enaUtility.R R/cycliv.R R/get.ns.R R/netOrder.R R/read.enam.R R/enaControl.R R/enaMTI.R R/set.orient.R R/enaEnviron.R R/enaStorage.R R/read.EcoNet.R R/get.orient.R R/enaAll.R R/mExp.R R/enaCycle.R R/enaTroAgg.R R/write.nea.R R/TES.R R/force.balance.R
vignettes
vignettes/enaR-vignette.pdf.asis
MD5
build
build/vignette.rds
DESCRIPTION
man
man/force.balance.Rd man/TES.Rd man/structure.statistics.Rd man/oyster.Rd man/read.enam.Rd man/EcoNetWeb.Rd man/cycliv.Rd man/pack.Rd man/eigenCentrality.Rd man/enaFlow.Rd man/bgcModels.Rd man/set.orient.Rd man/findPathLength.Rd man/enaControl.Rd man/enaModels.Rd man/enaStructure.Rd man/scc.Rd man/read.scor.Rd man/enaUtility.Rd man/read.wand.Rd man/write.nea.Rd man/enaCycle.Rd man/bcratio.Rd man/read.nea.Rd man/netOrder.Rd man/enaEnviron.Rd man/enaStorage.Rd man/TET.Rd man/get.orient.Rd man/enaTroAgg.Rd man/signs.Rd man/enaAll.Rd man/ssCheck.Rd man/as.extended.Rd man/write.EcoNet.Rd man/m.list.Rd man/troModels.Rd man/mExp.Rd man/environCentrality.Rd man/scifix.Rd man/read.EcoNet.Rd man/as.bipartite.Rd man/enaAscendency.Rd man/balance.Rd man/enaMTI.Rd man/ShannonDiversity.Rd man/enaR-package.Rd man/bal.Rd man/unpack.Rd man/enaModelInfo.Rd man/get.ns.Rd man/relationalChange.Rd

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