epiR: Tools for the Analysis of Epidemiological Data
Version 0.9-82

Tools for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.

AuthorMark Stevenson <mark.stevenson1@unimelb.edu.au> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone and Ryan Kyle
Date of publication2017-04-07 11:04:10 UTC
MaintainerMark Stevenson <mark.stevenson1@unimelb.edu.au>
LicenseGPL (>= 2)
Version0.9-82
URL http://fvas.unimelb.edu.au/veam
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("epiR")

Popular man pages

epi.ccsize: Sample size or power for an unmatched or matched case-control...
epi.cohortsize: Sample size, power or minimum detectable effect for a cohort...
epi.kappa: Kappa statistic
epi.occc: Overall concordance correlation coefficient (OCCC)
epi.prcc: Partial rank correlation coefficients
epi.prev: Estimate true prevalence
epi.tests: Sensitivity, specificity and predictive value of a diagnostic...
See all...

All man pages Function index File listing

Man pages

epi.2by2: Summary measures for count data presented in a 2 by 2 table
epi.about: The library epiR: summary information
epi.asc: Write matrix to an ASCII raster file
epi.betabuster: An R version of Wes Johnson and Chun-Lung Su's Betabuster
epi.bohning: Bohning's test for overdispersion of Poisson data
epi.ccc: Concordance correlation coefficient
epi.ccsize: Sample size or power for an unmatched or matched case-control...
epi.cluster1size: Sample size under under one-stage cluster sampling
epi.cluster2size: Sample size under under two-stage cluster sampling
epi.clustersize: Sample size for cluster-sample surveys
epi.cohortsize: Sample size, power or minimum detectable effect for a cohort...
epi.conf: Confidence intervals for means, proportions, incidence, and...
epi.convgrid: Convert British National Grid georeferences to easting and...
epi.cp: Extract unique covariate patterns from a data set
epi.cpresids: Covariate pattern residuals from a logistic regression model
epi.descriptives: Descriptive statistics
epi.detectsize: Sample size to detect disease
epi.dgamma: Estimate the precision of a [structured] heterogeneity term
epi.directadj: Directly adjusted incidence rate estimates
epi.dms: Decimal degrees and degrees, minutes and seconds conversion
epi.dsl: Mixed-effects meta-analysis of binary outcomes using the...
epi.edr: Estimated dissemination ratio
epi.empbayes: Empirical Bayes estimates
epi.epidural: Rates of use of epidural anaesthesia in trials of caregiver...
epi.equivb: Estimate the sample size for a parallel equivalence trial,...
epi.equivc: Estimate the sample size for a parallel equivalence trial,...
epi.herdtest: Estimate herd test characteristics
epi.incin: Laryngeal and lung cancer cases in Lancashire 1974 - 1983
epi.indirectadj: Indirectly adjusted incidence risk estimates
epi.insthaz: Instantaneous hazard computed on the basis of a Kaplan-Meier...
epi.interaction: Relative excess risk due to interaction in a case-control...
epi.iv: Fixed-effect meta-analysis of binary outcomes using the...
epi.kappa: Kappa statistic
epi.ltd: Lactation to date and standard lactation milk yields
epi.meansize: Sample size, power and minimum detectable difference when...
epi.mh: Fixed-effects meta-analysis of binary outcomes using the...
epi.nomogram: Post-test probability of disease given sensitivity and...
epi.noninfb: Estimate the sample size for a parallel non-inferiority...
epi.noninfc: Estimate the sample size for a parallel equivalence trial,...
epi.occc: Overall concordance correlation coefficient (OCCC)
epi.offset: Create offset vector
epi.pooled: Estimate herd test characteristics when pooled sampling is...
epi.popsize: Estimate population size
epi.prcc: Partial rank correlation coefficients
epi.prev: Estimate true prevalence
epi.propsize: Sample size, power and minimum detectable difference when...
epi.RtoBUGS: R to WinBUGS data conversion
epi.SClip: Lip cancer in Scotland 1975 - 1980
epi.simplesize: Sample size under simple random sampling
epi.smd: Fixed-effect meta-analysis of continuous outcomes using the...
epi.stratasize: Sample size under under stratified random sampling
epi.supb: Estimate the sample size for a parallel superiority trial,...
epi.supc: Estimate the sample size for a parallel superiority trial,...
epi.survivalsize: Sample size, power and minimum detectable hazard for time to...
epi.tests: Sensitivity, specificity and predictive value of a diagnostic...

Functions

Feta Source code
acceptbin Source code
bin.ci Source code
blaker.ci Source code
epi.2by2 Man page
epi.RtoBUGS Man page
epi.SClip Man page
epi.about Man page
epi.asc Man page Source code
epi.betabuster Man page Source code
epi.bohning Man page
epi.ccc Man page Source code
epi.ccsize Man page
epi.cluster1size Man page
epi.cluster2size Man page
epi.clustersize Man page
epi.cohortsize Man page
epi.conf Man page
epi.convgrid Man page
epi.cp Man page Source code
epi.cpresids Man page Source code
epi.descriptives Man page Source code
epi.detectsize Man page Source code
epi.dgamma Man page
epi.directadj Man page
epi.dms Man page
epi.dsl Man page
epi.edr Man page Source code
epi.empbayes Man page
epi.epidural Man page
epi.equivb Man page Source code
epi.equivc Man page Source code
epi.herdtest Man page Source code
epi.incin Man page
epi.indirectadj Man page
epi.insthaz Man page
epi.interaction Man page Source code
epi.iv Man page
epi.kappa Man page
epi.ltd Man page Source code
epi.meansize Man page
epi.mh Man page
epi.nomogram Man page Source code
epi.noninfb Man page Source code
epi.noninfc Man page Source code
epi.occc Man page Source code
epi.offset Man page
epi.pooled Man page Source code
epi.popsize Man page
epi.prcc Man page Source code
epi.prev Man page
epi.propsize Man page
epi.simplesize Man page Source code
epi.smd Man page
epi.stratasize Man page Source code
epi.supb Man page Source code
epi.supc Man page Source code
epi.survivalsize Man page
epi.tests Man page
logit Source code
nvlogit Source code
onAttach Source code
piXeta Source code
print.epi.2by2 Man page Source code
print.epi.occc Man page Source code
print.epi.tests Man page Source code
sterne.ci Source code
summary.epi.2by2 Man page Source code
summary.epi.occc Man page Source code
summary.epi.tests Man page Source code
theta Source code

Files

NAMESPACE
data
data/epi.epidural.RData
data/epi.incin.RData
data/epi.SClip.RData
R
R/epi.descriptives.R
R/epi.clustersize.R
R/epi.directadj.R
R/epi.noninfb.R
R/epi.prev.R
R/epi.bohning.R
R/epi.betabuster.R
R/epi.popsize.R
R/epi.kappa.R
R/epi.dsl.R
R/epi.convgrid.R
R/epi.meansize.R
R/epi.ccsize.R
R/epi.indirectadj.R
R/epi.mh.R
R/epi.detectsize.R
R/epi.herdtest.R
R/epi.cluster1size.R
R/epi.asc.R
R/epi.interaction.r
R/epi.cp.R
R/epi.conf.R
R/epi.ltd.R
R/epi.nomogram.R
R/epi.propsize.R
R/epi.smd.R
R/epi.noninfc.R
R/epi.cohortsize.R
R/epi.equivb.R
R/epi.about.R
R/epi.dms.R
R/epi.supb.R
R/epi.prcc.R
R/epi.edr.R
R/epi.insthaz.R
R/epi.empbayes.R
R/epi.survivalsize.R
R/epi.simplesize.R
R/epi.occc.R
R/epi.cpresids.R
R/epi.iv.R
R/epi.cluster2size.R
R/epi.2by2.R
R/epi.tests.R
R/epi.dgamma.R
R/epi.stratasize.R
R/epi.pooled.R
R/epi.equivc.R
R/epi.supc.R
R/epi.RtoBUGS.R
R/epi.ccc.R
R/zzz.R
R/epi.offset.R
MD5
DESCRIPTION
man
man/epi.ccsize.Rd
man/epi.indirectadj.Rd
man/epi.equivb.Rd
man/epi.asc.Rd
man/epi.cohortsize.Rd
man/epi.directadj.Rd
man/epi.supc.Rd
man/epi.about.Rd
man/epi.empbayes.Rd
man/epi.dms.Rd
man/epi.meansize.Rd
man/epi.prcc.Rd
man/epi.tests.Rd
man/epi.betabuster.Rd
man/epi.noninfb.Rd
man/epi.popsize.Rd
man/epi.dgamma.Rd
man/epi.smd.Rd
man/epi.occc.Rd
man/epi.simplesize.Rd
man/epi.stratasize.Rd
man/epi.equivc.Rd
man/epi.interaction.Rd
man/epi.offset.Rd
man/epi.propsize.Rd
man/epi.bohning.Rd
man/epi.conf.Rd
man/epi.clustersize.Rd
man/epi.edr.Rd
man/epi.mh.Rd
man/epi.cpresids.Rd
man/epi.nomogram.Rd
man/epi.cp.Rd
man/epi.ltd.Rd
man/epi.SClip.Rd
man/epi.iv.Rd
man/epi.herdtest.Rd
man/epi.noninfc.Rd
man/epi.convgrid.Rd
man/epi.incin.Rd
man/epi.descriptives.Rd
man/epi.ccc.Rd
man/epi.cluster2size.Rd
man/epi.2by2.Rd
man/epi.cluster1size.Rd
man/epi.prev.Rd
man/epi.survivalsize.Rd
man/epi.kappa.Rd
man/epi.pooled.Rd
man/epi.insthaz.Rd
man/epi.RtoBUGS.Rd
man/epi.supb.Rd
man/epi.dsl.Rd
man/epi.epidural.Rd
man/epi.detectsize.Rd
epiR documentation built on May 19, 2017, 8:38 p.m.

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