epiR: Tools for the Analysis of Epidemiological Data

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Tools for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.

Author
Mark Stevenson <mark.stevenson1@unimelb.edu.au> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone and Ryan Kyle
Date of publication
2016-07-18 14:10:53
Maintainer
Mark Stevenson <mark.stevenson1@unimelb.edu.au>
License
GPL (>= 2)
Version
0.9-79
URLs

View on CRAN

Man pages

epi.2by2
Summary measures for count data presented in a 2 by 2 table
epi.about
The library epiR: summary information
epi.asc
Write matrix to an ASCII raster file
epi.betabuster
An R version of Wes Johnson and Chun-Lung Su's Betabuster
epi.bohning
Bohning's test for overdispersion of Poisson data
epi.ccc
Concordance correlation coefficient
epi.ccsize
Sample size or power for an unmatched or matched case-control...
epi.cluster1size
Sample size under under one-stage cluster sampling
epi.cluster2size
Sample size under under two-stage cluster sampling
epi.clustersize
Sample size for cluster-sample surveys
epi.cohortsize
Sample size, power or minimum detectable effect for a cohort...
epi.conf
Confidence intervals for means, proportions, incidence, and...
epi.convgrid
Convert British National Grid georeferences to easting and...
epi.cp
Extract unique covariate patterns from a data set
epi.cpresids
Covariate pattern residuals from a logistic regression model
epi.descriptives
Descriptive statistics
epi.detectsize
Sample size to detect disease
epi.dgamma
Estimate the precision of a [structured] heterogeneity term
epi.directadj
Directly adjusted incidence rate estimates
epi.dms
Decimal degrees and degrees, minutes and seconds conversion
epi.dsl
Mixed-effects meta-analysis of binary outcomes using the...
epi.edr
Estimated dissemination ratio
epi.empbayes
Empirical Bayes estimates
epi.epidural
Rates of use of epidural anaesthesia in trials of caregiver...
epi.equivb
Estimate the sample size for a parallel equivalence trial,...
epi.equivc
Estimate the sample size for a parallel equivalence trial,...
epi.herdtest
Estimate herd test characteristics
epi.incin
Laryngeal and lung cancer cases in Lancashire 1974 - 1983
epi.indirectadj
Indirectly adjusted incidence risk estimates
epi.insthaz
Instantaneous hazard computed on the basis of a Kaplan-Meier...
epi.interaction
Relative excess risk due to interaction in a case-control...
epi.iv
Fixed-effect meta-analysis of binary outcomes using the...
epi.kappa
Kappa statistic
epi.ltd
Lactation to date and standard lactation milk yields
epi.meansize
Sample size, power and minimum detectable difference when...
epi.mh
Fixed-effects meta-analysis of binary outcomes using the...
epi.nomogram
Post-test probability of disease given sensitivity and...
epi.noninfb
Estimate the sample size for a parallel non-inferiority...
epi.noninfc
Estimate the sample size for a parallel equivalence trial,...
epi.occc
Overall concordance correlation coefficient (OCCC)
epi.offset
Create offset vector
epi.pooled
Estimate herd test characteristics when pooled sampling is...
epi.popsize
Estimate population size
epi.prcc
Partial rank correlation coefficients
epi.prev
Estimate true prevalence
epi.propsize
Sample size, power and minimum detectable difference when...
epi.RtoBUGS
R to WinBUGS data conversion
epi.SClip
Lip cancer in Scotland 1975 - 1980
epi.simplesize
Sample size under simple random sampling
epi.smd
Fixed-effect meta-analysis of continuous outcomes using the...
epi.stratasize
Sample size under under stratified random sampling
epi.supb
Estimate the sample size for a parallel superiority trial,...
epi.supc
Estimate the sample size for a parallel superiority trial,...
epi.survivalsize
Sample size, power and minimum detectable hazard for time to...
epi.tests
Sensitivity, specificity and predictive value of a diagnostic...

Files in this package

epiR
epiR/NAMESPACE
epiR/data
epiR/data/epi.epidural.RData
epiR/data/epi.incin.RData
epiR/data/epi.SClip.RData
epiR/R
epiR/R/epi.descriptives.R
epiR/R/epi.clustersize.R
epiR/R/epi.directadj.R
epiR/R/epi.noninfb.R
epiR/R/epi.prev.R
epiR/R/epi.bohning.R
epiR/R/epi.betabuster.R
epiR/R/epi.popsize.R
epiR/R/epi.kappa.R
epiR/R/epi.dsl.R
epiR/R/epi.convgrid.R
epiR/R/epi.meansize.R
epiR/R/epi.ccsize.R
epiR/R/epi.indirectadj.R
epiR/R/epi.mh.R
epiR/R/epi.detectsize.R
epiR/R/epi.herdtest.R
epiR/R/epi.cluster1size.R
epiR/R/epi.asc.R
epiR/R/epi.interaction.r
epiR/R/epi.cp.R
epiR/R/epi.conf.R
epiR/R/epi.ltd.R
epiR/R/epi.nomogram.R
epiR/R/epi.propsize.R
epiR/R/epi.smd.R
epiR/R/epi.noninfc.R
epiR/R/epi.cohortsize.R
epiR/R/epi.equivb.R
epiR/R/epi.about.R
epiR/R/epi.dms.R
epiR/R/epi.supb.R
epiR/R/epi.prcc.R
epiR/R/epi.edr.R
epiR/R/epi.insthaz.R
epiR/R/epi.empbayes.R
epiR/R/epi.survivalsize.R
epiR/R/epi.simplesize.R
epiR/R/epi.occc.R
epiR/R/epi.cpresids.R
epiR/R/epi.iv.R
epiR/R/epi.cluster2size.R
epiR/R/epi.2by2.R
epiR/R/epi.tests.R
epiR/R/epi.dgamma.R
epiR/R/epi.stratasize.R
epiR/R/epi.pooled.R
epiR/R/epi.equivc.R
epiR/R/epi.supc.R
epiR/R/epi.RtoBUGS.R
epiR/R/epi.ccc.R
epiR/R/zzz.R
epiR/R/epi.offset.R
epiR/MD5
epiR/DESCRIPTION
epiR/man
epiR/man/epi.ccsize.Rd
epiR/man/epi.indirectadj.Rd
epiR/man/epi.equivb.Rd
epiR/man/epi.asc.Rd
epiR/man/epi.cohortsize.Rd
epiR/man/epi.directadj.Rd
epiR/man/epi.supc.Rd
epiR/man/epi.about.Rd
epiR/man/epi.empbayes.Rd
epiR/man/epi.dms.Rd
epiR/man/epi.meansize.Rd
epiR/man/epi.prcc.Rd
epiR/man/epi.tests.Rd
epiR/man/epi.betabuster.Rd
epiR/man/epi.noninfb.Rd
epiR/man/epi.popsize.Rd
epiR/man/epi.dgamma.Rd
epiR/man/epi.smd.Rd
epiR/man/epi.occc.Rd
epiR/man/epi.simplesize.Rd
epiR/man/epi.stratasize.Rd
epiR/man/epi.equivc.Rd
epiR/man/epi.interaction.Rd
epiR/man/epi.offset.Rd
epiR/man/epi.propsize.Rd
epiR/man/epi.bohning.Rd
epiR/man/epi.conf.Rd
epiR/man/epi.clustersize.Rd
epiR/man/epi.edr.Rd
epiR/man/epi.mh.Rd
epiR/man/epi.cpresids.Rd
epiR/man/epi.nomogram.Rd
epiR/man/epi.cp.Rd
epiR/man/epi.ltd.Rd
epiR/man/epi.SClip.Rd
epiR/man/epi.iv.Rd
epiR/man/epi.herdtest.Rd
epiR/man/epi.noninfc.Rd
epiR/man/epi.convgrid.Rd
epiR/man/epi.incin.Rd
epiR/man/epi.descriptives.Rd
epiR/man/epi.ccc.Rd
epiR/man/epi.cluster2size.Rd
epiR/man/epi.2by2.Rd
epiR/man/epi.cluster1size.Rd
epiR/man/epi.prev.Rd
epiR/man/epi.survivalsize.Rd
epiR/man/epi.kappa.Rd
epiR/man/epi.pooled.Rd
epiR/man/epi.insthaz.Rd
epiR/man/epi.RtoBUGS.Rd
epiR/man/epi.supb.Rd
epiR/man/epi.dsl.Rd
epiR/man/epi.epidural.Rd
epiR/man/epi.detectsize.Rd