epiR: Tools for the Analysis of Epidemiological Data

Tools for the analysis of epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.

AuthorMark Stevenson <mark.stevenson1@unimelb.edu.au> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone and Ryan Kyle
Date of publication2016-07-18 14:10:53
MaintainerMark Stevenson <mark.stevenson1@unimelb.edu.au>
LicenseGPL (>= 2)

View on CRAN

Man pages

epi.2by2: Summary measures for count data presented in a 2 by 2 table

epi.about: The library epiR: summary information

epi.asc: Write matrix to an ASCII raster file

epi.betabuster: An R version of Wes Johnson and Chun-Lung Su's Betabuster

epi.bohning: Bohning's test for overdispersion of Poisson data

epi.ccc: Concordance correlation coefficient

epi.ccsize: Sample size or power for an unmatched or matched case-control...

epi.cluster1size: Sample size under under one-stage cluster sampling

epi.cluster2size: Sample size under under two-stage cluster sampling

epi.clustersize: Sample size for cluster-sample surveys

epi.cohortsize: Sample size, power or minimum detectable effect for a cohort...

epi.conf: Confidence intervals for means, proportions, incidence, and...

epi.convgrid: Convert British National Grid georeferences to easting and...

epi.cp: Extract unique covariate patterns from a data set

epi.cpresids: Covariate pattern residuals from a logistic regression model

epi.descriptives: Descriptive statistics

epi.detectsize: Sample size to detect disease

epi.dgamma: Estimate the precision of a [structured] heterogeneity term

epi.directadj: Directly adjusted incidence rate estimates

epi.dms: Decimal degrees and degrees, minutes and seconds conversion

epi.dsl: Mixed-effects meta-analysis of binary outcomes using the...

epi.edr: Estimated dissemination ratio

epi.empbayes: Empirical Bayes estimates

epi.epidural: Rates of use of epidural anaesthesia in trials of caregiver...

epi.equivb: Estimate the sample size for a parallel equivalence trial,...

epi.equivc: Estimate the sample size for a parallel equivalence trial,...

epi.herdtest: Estimate herd test characteristics

epi.incin: Laryngeal and lung cancer cases in Lancashire 1974 - 1983

epi.indirectadj: Indirectly adjusted incidence risk estimates

epi.insthaz: Instantaneous hazard computed on the basis of a Kaplan-Meier...

epi.interaction: Relative excess risk due to interaction in a case-control...

epi.iv: Fixed-effect meta-analysis of binary outcomes using the...

epi.kappa: Kappa statistic

epi.ltd: Lactation to date and standard lactation milk yields

epi.meansize: Sample size, power and minimum detectable difference when...

epi.mh: Fixed-effects meta-analysis of binary outcomes using the...

epi.nomogram: Post-test probability of disease given sensitivity and...

epi.noninfb: Estimate the sample size for a parallel non-inferiority...

epi.noninfc: Estimate the sample size for a parallel equivalence trial,...

epi.occc: Overall concordance correlation coefficient (OCCC)

epi.offset: Create offset vector

epi.pooled: Estimate herd test characteristics when pooled sampling is...

epi.popsize: Estimate population size

epi.prcc: Partial rank correlation coefficients

epi.prev: Estimate true prevalence

epi.propsize: Sample size, power and minimum detectable difference when...

epi.RtoBUGS: R to WinBUGS data conversion

epi.SClip: Lip cancer in Scotland 1975 - 1980

epi.simplesize: Sample size under simple random sampling

epi.smd: Fixed-effect meta-analysis of continuous outcomes using the...

epi.stratasize: Sample size under under stratified random sampling

epi.supb: Estimate the sample size for a parallel superiority trial,...

epi.supc: Estimate the sample size for a parallel superiority trial,...

epi.survivalsize: Sample size, power and minimum detectable hazard for time to...

epi.tests: Sensitivity, specificity and predictive value of a diagnostic...

Files in this package

epiR/R/epi.descriptives.R epiR/R/epi.clustersize.R epiR/R/epi.directadj.R epiR/R/epi.noninfb.R epiR/R/epi.prev.R epiR/R/epi.bohning.R epiR/R/epi.betabuster.R epiR/R/epi.popsize.R epiR/R/epi.kappa.R epiR/R/epi.dsl.R epiR/R/epi.convgrid.R epiR/R/epi.meansize.R epiR/R/epi.ccsize.R epiR/R/epi.indirectadj.R epiR/R/epi.mh.R epiR/R/epi.detectsize.R epiR/R/epi.herdtest.R epiR/R/epi.cluster1size.R epiR/R/epi.asc.R
epiR/R/epi.cp.R epiR/R/epi.conf.R epiR/R/epi.ltd.R epiR/R/epi.nomogram.R epiR/R/epi.propsize.R epiR/R/epi.smd.R epiR/R/epi.noninfc.R epiR/R/epi.cohortsize.R epiR/R/epi.equivb.R epiR/R/epi.about.R epiR/R/epi.dms.R epiR/R/epi.supb.R epiR/R/epi.prcc.R epiR/R/epi.edr.R epiR/R/epi.insthaz.R epiR/R/epi.empbayes.R epiR/R/epi.survivalsize.R epiR/R/epi.simplesize.R epiR/R/epi.occc.R epiR/R/epi.cpresids.R epiR/R/epi.iv.R epiR/R/epi.cluster2size.R epiR/R/epi.2by2.R epiR/R/epi.tests.R epiR/R/epi.dgamma.R epiR/R/epi.stratasize.R epiR/R/epi.pooled.R epiR/R/epi.equivc.R epiR/R/epi.supc.R epiR/R/epi.RtoBUGS.R epiR/R/epi.ccc.R epiR/R/zzz.R epiR/R/epi.offset.R
epiR/man/epi.ccsize.Rd epiR/man/epi.indirectadj.Rd epiR/man/epi.equivb.Rd epiR/man/epi.asc.Rd epiR/man/epi.cohortsize.Rd epiR/man/epi.directadj.Rd epiR/man/epi.supc.Rd epiR/man/epi.about.Rd epiR/man/epi.empbayes.Rd epiR/man/epi.dms.Rd epiR/man/epi.meansize.Rd epiR/man/epi.prcc.Rd epiR/man/epi.tests.Rd epiR/man/epi.betabuster.Rd epiR/man/epi.noninfb.Rd epiR/man/epi.popsize.Rd epiR/man/epi.dgamma.Rd epiR/man/epi.smd.Rd epiR/man/epi.occc.Rd epiR/man/epi.simplesize.Rd epiR/man/epi.stratasize.Rd epiR/man/epi.equivc.Rd epiR/man/epi.interaction.Rd epiR/man/epi.offset.Rd epiR/man/epi.propsize.Rd epiR/man/epi.bohning.Rd epiR/man/epi.conf.Rd epiR/man/epi.clustersize.Rd epiR/man/epi.edr.Rd epiR/man/epi.mh.Rd epiR/man/epi.cpresids.Rd epiR/man/epi.nomogram.Rd epiR/man/epi.cp.Rd epiR/man/epi.ltd.Rd epiR/man/epi.SClip.Rd epiR/man/epi.iv.Rd epiR/man/epi.herdtest.Rd epiR/man/epi.noninfc.Rd epiR/man/epi.convgrid.Rd epiR/man/epi.incin.Rd epiR/man/epi.descriptives.Rd epiR/man/epi.ccc.Rd epiR/man/epi.cluster2size.Rd epiR/man/epi.2by2.Rd epiR/man/epi.cluster1size.Rd epiR/man/epi.prev.Rd epiR/man/epi.survivalsize.Rd epiR/man/epi.kappa.Rd epiR/man/epi.pooled.Rd epiR/man/epi.insthaz.Rd epiR/man/epi.RtoBUGS.Rd epiR/man/epi.supb.Rd epiR/man/epi.dsl.Rd epiR/man/epi.epidural.Rd epiR/man/epi.detectsize.Rd

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