all_obs_types | Get a list of all observation types used in a model |
as.matrix.epimodel | Extract posterior samples |
EnglandNewCases | Covid-19 Case Counts for England |
epidemia-package | Flexible Epidemic Modeling with epidemia |
epiinf | Model Latent Infections |
epim | Fit a Bayesian epidemiological model with epidemia |
epimodel-objects | Fitted Epidemiological Model Objects |
epiobs | Define Observational Models |
epirt | Model Reproduction Rates |
EuropeCovid | Covid-19 data for European countries |
EuropeCovid2 | Covid-19 data for European countries |
evaluate_forecast | Posterior model evaluations |
formula.epimodel | Formula method for epimodel objects |
get_samps | Retrieve final states from sampled Markov chains |
get_x | Extract X or Z from an epimodel object |
hexp | A hierarchical model for seeded infections |
model.frame.epimodel | model.frame method for epimodel objects. Please see... |
ngrps.mixed | Returns the levels for each grouping factor in the fitted... |
pairs.epimodel | Pairs method for epimodel objects |
plot_coverage | Plot coverage probability of posterior credible intervals |
plot.epimodel | Plot method for epimodel objects |
plot_infections | Plot latent infections |
plot_infectious | Plot total infectiousness over time. |
plot_linpred | Plotting the posterior linear predictor for R or... |
plot_metrics | Plot CRPS, Median/Mean Absolute Error |
plot_obs | Plot posterior predictive distributions |
plot_rt | Plot time-varying reproduction rates |
posterior_coverage | Coverage of posterior credible intervals |
posterior_infections | Generic function for getting posterior draws of daily... |
posterior_infectious | Generic function for getting posterior draws of total... |
posterior_latent | Generic function for getting posterior draws of a specified... |
posterior_linpred | Gives the posterior linear predictor for the reproduction... |
posterior_metrics | CRPS, Mean Absolute Error, Median Absolute Error |
posterior_predict.epimodel | Draws samples from the posterior predictive distribution of... |
posterior_rt | Generic function for getting posterior draws of the... |
posterior_sample_size | Get posterior sample size from a fitted model |
print.epimodel | Print fitted model details |
print.prior_summary.epimodel | Print method for 'prior_summary.epimodel' objects |
print.prior_summary_reg.epimodel | Print method for 'prior_summary_reg.epimodel' objects |
prior_summary.epimodel | Returns a summary of the prior distributions used |
reexports | Objects exported from other packages |
rw | Adds random walks with independent Gaussian steps to the... |
scaled_logit | Represents a 'scaled' logit link |
shifted_gamma | A shifted gamma prior |
summary.epimodel | Summary method for epimodel objects |
terms.epimodel | Terms method for epimodel objects |
terms_rw | Finds random walk terms in a formula object |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.