epidemia-package: Flexible Epidemic Modeling with epidemia

Description References

Description

The epidemia package allows researchers to flexibly specify and fit Bayesian epidemiological models in the style of \insertCiteFlaxman2020;textualepidemia. The package leverages R's formula interface to parameterize the reproduction rate in terms of covariates, and allows pooling of parameters. The design of the package has been inspired by, and borrowed from, the rstanarm package \insertCitegoodrich_2020epidemia. epidemia uses rstan \insertCiterstan_2020epidemia as the backend for fitting the models. The primary model fitting function in epidemia is epim.

References

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epidemia documentation built on Oct. 25, 2021, 9:09 a.m.