Global functions | |
---|---|
.cnms | Source code |
.cnms.epimodel | Source code |
.flist | Source code |
.flist.epimodel | Source code |
.format_pars | Source code |
.get_group | Source code |
.get_obs | Source code |
.get_time | Source code |
.max_treedepth | Source code |
.median_and_madsd | Source code |
.mixed_check | Source code |
.print_covariance_prior | Source code |
.print_scalar_prior | Source code |
.print_vector_prior | Source code |
.printfr | Source code |
EnglandNewCases | Man page |
EuropeCovid | Man page |
EuropeCovid2 | Man page |
R | Source code |
STOP_no_draws | Source code |
STOP_sampling_only | Source code |
VarCorr.epimodel | Source code |
`%ORifNULL%` | Source code |
add_median | Source code |
add_xlev | Source code |
all_obs_types | Man page Source code |
all_obs_types.epimodel | Man page Source code |
all_vars | Source code |
as.array.epimodel | Man page Source code |
as.character.expr | Source code |
as.data.frame.epimodel | Man page Source code |
as.matrix.epimodel | Man page Source code |
as.string.formula | Source code |
base_plot | Source code |
by100k | Source code |
cauchy | Man page |
check_all_in_set | Source code |
check_all_vars_data | Source code |
check_alpha | Source code |
check_character | Source code |
check_consecutive_dates | Source code |
check_data | Source code |
check_data.frame | Source code |
check_dates | Source code |
check_df | Source code |
check_draws | Source code |
check_formula | Source code |
check_group_as_factor | Source code |
check_group_subset | Source code |
check_groups_data | Source code |
check_has_rows | Source code |
check_in_set | Source code |
check_inf | Source code |
check_integer | Source code |
check_levels | Source code |
check_list | Source code |
check_logical | Source code |
check_missing_pars | Source code |
check_name_conflicts_data | Source code |
check_non_negative | Source code |
check_numeric | Source code |
check_obs | Source code |
check_obs_formula | Source code |
check_offset | Source code |
check_pops | Source code |
check_pops_unique | Source code |
check_positive | Source code |
check_prior | Source code |
check_reTrms | Source code |
check_rhats | Source code |
check_rm | Source code |
check_rt | Source code |
check_rt_formula | Source code |
check_scalar | Source code |
check_smooth | Source code |
check_sum_to_one | Source code |
check_time_as_date | Source code |
collect_pars | Source code |
crps | Source code |
cumul | Source code |
cumulate | Source code |
cumulate.epiobs_ | Source code |
daily_coverage | Source code |
daily_error | Source code |
decov | Man page |
epidemia | Man page |
epidemia-package | Man page |
epiinf | Man page Source code |
epim | Man page Source code |
epimodel | Source code |
epimodel-objects | Man page |
epiobs | Man page Source code |
epiobs_ | Source code |
epirt | Man page Source code |
epirt_ | Source code |
evaluate_forecast | Man page Source code |
exclude_lp_and_ppd | Source code |
exponential | Man page |
fancy_scientific | Source code |
formula.epiformula | Source code |
formula.epimodel | Man page Source code |
geom_stepribbon | Source code |
get_autocor_gr | Source code |
get_autocor_time | Source code |
get_gr | Source code |
get_gr.epiobs_ | Source code |
get_grs | Source code |
get_i2o | Source code |
get_i2o.epiobs_ | Source code |
get_labels | Source code |
get_obs | Source code |
get_obs.epiobs_ | Source code |
get_quantiles | Source code |
get_samps | Man page Source code |
get_time | Source code |
get_time.epiobs_ | Source code |
get_times | Source code |
get_x | Man page Source code |
get_x.default | Source code |
get_x.mixed | Source code |
get_z | Man page Source code |
get_z.mixed | Source code |
gr_subset | Source code |
grep_for_pars | Source code |
group_date_col_data | Source code |
handle_glm_prior | Source code |
hexp | Man page Source code |
hs | Man page |
hs_plus | Man page |
is.epimodel | Source code |
is.mixed | Source code |
is.mixed.epimodel | Source code |
is.mixed.formula | Source code |
is.scalar | Source code |
is_autocor | Source code |
justRE | Source code |
just_fe | Source code |
laplace | Man page |
lasso | Man page |
last_dimnames | Source code |
lhs | Source code |
linear_predictor | Source code |
linear_predictor.default | Source code |
linear_predictor.matrix | Source code |
lkj | Man page |
make_Sigma_nms | Source code |
make_V | Source code |
make_b_nms | Source code |
make_glmerControl | Source code |
make_inf_nms | Source code |
make_oaux_nms | Source code |
make_obeta_nms | Source code |
make_obs_ac_nms | Source code |
make_ointercept_nms | Source code |
make_rw_nms | Source code |
make_rw_sigma_nms | Source code |
make_stan_summary | Source code |
maybe_broadcast | Source code |
mcmc_function_name | Source code |
mflevels | Source code |
model.frame.epimodel | Man page Source code |
needs_chains | Source code |
new_inf_stanmat | Source code |
new_names | Source code |
new_rw_stanmat | Source code |
ngrps | Man page |
ngrps.mixed | Man page Source code |
nobs | Source code |
nobs.epiobs_ | Source code |
normal | Man page |
norws | Source code |
obs_to_int | Source code |
pad | Source code |
pad_reTrms | Source code |
pairs.epimodel | Man page Source code |
pars | Source code |
parse_all_terms | Source code |
parse_data | Source code |
parse_formula | Source code |
parse_latent | Source code |
parse_mm | Source code |
parse_new_data | Source code |
parse_obs | Source code |
parse_rw_labels | Source code |
parse_term | Source code |
plot.epimodel | Man page Source code |
plot_coverage | Man page Source code |
plot_infections | Man page Source code |
plot_infections.epimodel | Man page Source code |
plot_infectious | Man page Source code |
plot_infectious.epimodel | Man page Source code |
plot_linpred | Man page Source code |
plot_linpred.epimodel | Man page Source code |
plot_metrics | Man page Source code |
plot_obs | Man page Source code |
plot_obs.epimodel | Man page Source code |
plot_rt | Man page Source code |
plot_rt.epimodel | Man page Source code |
posterior_coverage | Man page Source code |
posterior_infections | Man page Source code |
posterior_infections.epimodel | Man page Source code |
posterior_infectious | Man page Source code |
posterior_infectious.epimodel | Man page Source code |
posterior_latent | Man page Source code |
posterior_latent.epimodel | Man page Source code |
posterior_linpred | Man page Source code |
posterior_metrics | Man page Source code |
posterior_predict | Man page |
posterior_predict.epimodel | Man page Source code |
posterior_rt | Man page Source code |
posterior_rt.epimodel | Man page Source code |
posterior_sample_size | Man page Source code |
posterior_sample_size.epimodel | Man page Source code |
posterior_sims | Source code |
pp_b_ord | Source code |
pp_eta | Source code |
pp_eta_ac | Source code |
pp_eta_fe | Source code |
pp_eta_re | Source code |
pp_stanmat | Source code |
print.epimodel | Man page Source code |
print.prior_summary.epimodel | Man page Source code |
print.prior_summary_reg.epimodel | Man page Source code |
print.summary.epimodel | Man page Source code |
prior_summary | Man page |
prior_summary.epimodel | Man page Source code |
process_x | Source code |
product_normal | Man page |
reexports | Man page |
restrict_pars | Source code |
rhs | Source code |
rw | Man page Source code |
scaled_logit | Man page Source code |
select_cols_data | Source code |
set_plotting_args | Source code |
set_plotting_fun | Source code |
set_prior_scale | Source code |
shifted_gamma | Man page Source code |
smooth_obs | Source code |
spaghetti_base | Source code |
spaghetti_infections | Man page Source code |
spaghetti_obs | Man page Source code |
spaghetti_rt | Man page Source code |
standata_all | Source code |
standata_autocor | Source code |
standata_data | Source code |
standata_inf | Source code |
standata_obs | Source code |
standata_reg | Source code |
standata_rt | Source code |
student_t | Man page |
sub_ | Source code |
subsamp | Source code |
subset_data | Source code |
subset_for_dates | Source code |
summarize_glm_prior | Source code |
summary.epimodel | Man page Source code |
terms.epimodel | Man page |
terms_rw | Man page Source code |
transformTheta_L | Source code |
transform_obs | Source code |
transform_rt | Source code |
unpad_reTrms | Source code |
unpad_reTrms.array | Source code |
unpad_reTrms.default | Source code |
used.sampling | Source code |
used.variational | Source code |
validate_neff_ratio | Source code |
validate_parameter_value | Source code |
validate_plotfun_for_opt_or_vb | Source code |
validate_rhat | Source code |
warn_sum_to_one | Source code |
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