Epidemic/Network-Related Tools

BuildX | Build a dyadic covariate matrix (X) |

epi2newick | Prints a transmission tree in Newick format. |

Epinet | Uses epidemic data to perform Bayesian inference on a contact... |

epinet-internal | Internal epinet Objects |

ess | Calculate the Effective Sample Size |

Hagelloch | Hagelloch measles data. |

MCMCcontrol | Set control parameters for epinet MCMC algorithm |

plot.epidemic | Plot the spread of an epidemic |

plot.epinet | Plot the spread of an epidemic |

print.epidemic | Prints an epidemict object |

print.epinet | Print basic information about an epinet object |

Priorcontrol | Set prior distributions and hyperparameters for epinet MCMC... |

SEIR.simulator | Simulate an epidemic on a contact network |

SimulateDyadicLinearERGM | Simulates an ERGM network using given covariate values |

summary.epidemic | Summarize simulated epidemic |

summary.epinet | Summarize posterior samples from epinet object |

write.epinet | Writes posterior samples from an epinet object to an output... |

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