epitools: Epidemiology Tools
Version 0.5-9

Tools for training and practicing epidemiologists including methods for two-way and multi-way contingency tables.

AuthorTomas J. Aragon [aut], Michael P. Fay [ctb], Daniel Wollschlaeger [ctb], Adam Omidpanah [cre, ctb]
Date of publication2017-04-14 23:04:36 UTC
MaintainerAdam Omidpanah <adam.omidpanah@wsu.edu>
LicenseGPL (>= 2)
Version0.5-9
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("epitools")

Popular man pages

ageadjust.direct: Age standardization by direct method, with exact confidence...
epicurve: Construct an epidemic curve
julian2date: Convert a julian date into standard a date format
oddsratio: Odds ratio estimation and confidence intervals
oswego: Outbreak of Gastrointestinal Illness in Oswego County, 1940
pois.conf.int: Confidence intervals for Poisson counts or rates
wcgs: Western Collaborative Group Study data
See all...

All man pages Function index File listing

Man pages

ageadjust.direct: Age standardization by direct method, with exact confidence...
ageadjust.indirect: Age standardization by indirect method, with exact confidence...
as.hour: Convert date-time object into hour units
as.month: Convert dates into months of the year for plotting epidemic...
as.week: Convert dates object in 'disease week' for plotting epidemic...
binom.conf.int: Confidence intervals for binomial counts or proportions
colorbrewer: Display and create ColorBrewer palettes
colors.plot: Plots R's 657 named colors for selection
epicurve: Construct an epidemic curve
epidate: Convert dates into multiple legible formats
epitab: Epidemiologic tabulation for a cohort or case-control study
epitable: Create r x c contigency table (exposure levels vs. binary...
expand.table: Expand contingency table into individual-level data set
expected: Expected values in a table
julian2date: Convert a julian date into standard a date format
kapmeier: Implements product-limit (Kaplan-Meier) method
oddsratio: Odds ratio estimation and confidence intervals
or.midp: Odds ratio estimation and confidence intervals using mid-p...
ormidp.test: odds ratio test for independence (p value) for a 2x2 table
oswego: Outbreak of Gastrointestinal Illness in Oswego County, 1940
pois.conf.int: Confidence intervals for Poisson counts or rates
probratio: Obtain unbiased probability ratios from logistic regression...
rate2by2.test: Comparative tests of independence in rx2 rate tables
rateratio: Rate ratio estimation and confidence intervals
ratetable: Create r x 2 count and person-time table for calculating...
riskratio: Risk ratio estimation and confidence intervals
tab2by2.test: Comparative tests of independence in rx2 contigency tables
table.margins: Marginal totals of a table
wcgs: Western Collaborative Group Study data
wnv: West Nile Virus human cases reported in California, USA, as...

Functions

ageadjust.direct Man page
ageadjust.indirect Man page
as.hour Man page
as.month Man page
as.week Man page
binom.approx Man page
binom.exact Man page
binom.wilson Man page
colorbrewer.data Man page Source code
colorbrewer.display Man page
colorbrewer.palette Man page
colors.matrix Man page
colors.plot Man page
epicurve.dates Man page
epicurve.hours Man page
epicurve.months Man page
epicurve.table Man page Source code
epicurve.weeks Man page
epidate Man page
epitab Man page Source code
epitable Man page
expand.table Man page Source code
expected Man page Source code
julian2date Man page
kapmeier Man page
oddsratio Man page Source code
oddsratio.fisher Man page Source code
oddsratio.midp Man page
oddsratio.small Man page
oddsratio.wald Man page
or.midp Man page
ormidp.test Man page Source code
oswego Man page
pois.approx Man page
pois.byar Man page
pois.daly Man page
pois.exact Man page
probratio Man page Source code
rate2by2.test Man page
rateratio Man page
rateratio.midp Man page
rateratio.wald Man page
ratetable Man page
riskratio Man page
riskratio.boot Man page
riskratio.small Man page
riskratio.wald Man page
tab2by2.test Man page
table.margins Man page
wcgs Man page
wnv Man page

Files

NAMESPACE
data
data/wnv.rda
data/oswego.rda
data/wcgs.rda
R
R/as.week.R
R/rate2by2.test.R
R/epidate.R
R/ageadjust.direct.R
R/epicurve.dates.R
R/probratio.r
R/colors.matrix.R
R/pois.daly.R
R/pois.exact.R
R/tab2by2.test.R
R/oddsratio.small.R
R/epitab.R
R/expand.table.R
R/colorbrewer.pallette.R
R/colors.plot.R
R/oddsratio.wald.R
R/or.midp.R
R/riskratio.wald.R
R/epicurve.hours.R
R/as.month.R
R/riskratio.boot.R
R/pois.byar.R
R/riskratio.R
R/kapmeier.R
R/rateratio.R
R/oddsratio.R
R/rateratio.midp.R
R/ratetable.R
R/ageadjust.indirect.R
R/ormidp.test.R
R/table.margins.R
R/rateratio.wald.R
R/binom.approx.R
R/colorbrewer.display.R
R/binom.exact.R
R/epicurve.table.R
R/epicurve.months.R
R/pois.approx.R
R/riskratio.small.R
R/oddsratio.midp.R
R/as.hour.R
R/colorbrewer.data.R
R/binom.wilson.R
R/oddsratio.fisher.R
R/julian2date.R
R/epicurve.weeks.R
R/epitable.R
R/expected.R
MD5
DESCRIPTION
man
man/table.margins.Rd
man/ageadjust.direct.Rd
man/epitab.Rd
man/epidate.Rd
man/ormidp.test.Rd
man/expand.table.Rd
man/julian2date.Rd
man/riskratio.Rd
man/ratetable.Rd
man/wcgs.Rd
man/rate2by2.test.Rd
man/ageadjust.indirect.Rd
man/pois.conf.int.Rd
man/wnv.Rd
man/as.hour.Rd
man/oddsratio.Rd
man/colors.plot.Rd
man/epicurve.Rd
man/binom.conf.int.Rd
man/tab2by2.test.Rd
man/expected.Rd
man/as.week.Rd
man/epitable.Rd
man/colorbrewer.Rd
man/as.month.Rd
man/or.midp.Rd
man/kapmeier.Rd
man/rateratio.Rd
man/probratio.Rd
man/oswego.Rd
epitools documentation built on May 19, 2017, 1:27 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.