Man pages for eqtl
Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
| AA.brief.introduction | Introductory comments on R/eqtl |
| A.importing.data | A simple way to import the data |
| ATH.coord | Data on probes coordinates |
| BSpgmap | Genetic map data of a RIL population |
| calc.adef | Compute the additive effect at each QTL marker |
| calc.Rsq | Estimate R square of individual QTLs and QTL interactions |
| cim.peak | Genome scan using previously detected QTLs as covariates |
| classify.qtl | Estimate the acting type of expression QTL |
| cleanphe | Remove undesired phenotypes and LOD results from cross and... |
| cover.peak | List QTLs within a genetical region from a peak object |
| define.peak | Defines the QTL with support interval and exclusionary window |
| drop.peakfeat | Erase peak features in peak object |
| eqtlversion | Installed version of R/eqtl |
| genoplot | Genome plot of the eQTL data on the expression traits... |
| gpt | Global Permutation Threshold |
| localize.qtl | Compute QTL physical positions from QTL genetic positions |
| map.peak | Summaries maximum LOD peak position from peak object |
| mnames.map | List all markers from a cross object |
| peak.2.array | Build a simple array from a peak object |
| peaksummary | Print summary of QTL definition |
| plotRsq | Plot R square data |
| pseudo.map | The makers and pseudo-markers genetic map |
| Rsq.2.array | Add R square data to peak.array data frame |
| seed10 | Data on gene expression level variation |
| wash.covar | Erase additive covariates LOD peaks on the LOD curve |
