ergm: Fit, Simulate and Diagnose Exponential-Family Models for Networks

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An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGM). "ergm" is a part of the "statnet" suite of packages for network analysis.

Author
Mark S. Handcock [aut], David R. Hunter [aut], Carter T. Butts [aut], Steven M. Goodreau [aut], Pavel N. Krivitsky [aut, cre], Martina Morris [aut], Li Wang [ctb], Kirk Li [ctb], Skye Bender-deMoll [ctb]
Date of publication
2016-03-25 09:12:20
Maintainer
Pavel N. Krivitsky <pavel@uow.edu.au>
License
GPL-3 + file LICENSE
Version
3.6.0
URLs

View on CRAN

Man pages

anova.ergm
ANOVA for ERGM Fits
approx.hotelling.diff.test
Approximate Hotelling T^2-Test for One Sample Means
as.edgelist
Convert a network object into a numeric edgelist matrix
as.network.numeric
Create a Simple Random network of a Given Size
check.ErgmTerm
Ensures an Ergm Term and its Arguments Meet Appropriate...
coef.ergm
Extract Model Coefficients
coef.length.model
Extract Number of parameters in ergm Model
control.ergm
Auxiliary for Controlling ERGM Fitting
control.ergm.bridge
Auxiliary for Controlling ergm.bridge
control.gof
Auxiliary for Controlling ERGM Goodness-of-Fit Evaluation
control.logLik.ergm
Auxiliary for Controlling logLik.ergm
control.san
Auxiliary for Controlling SAN
control.simulate.ergm
Auxiliary for Controlling ERGM Simulation
degreedist
Computes and Returns the Degree Distribution Information for...
ecoli
Two versions of an E. Coli network dataset
enformulate.curved
Convert a curved ERGM into a form suitable as initial values...
ergm
Exponential-Family Random Graph Models
ergm.allstats
Calculate all possible vectors of statistics on a network for...
ergm.bounddeg
initializes the parameters to bound degree during sampling
ergm.bridge.dindstart.llk
Bridge sampling to estiamte log-likelihood of an ERGM, using...
ergm.bridge.llr
A simple implementation of bridge sampling to evaluate...
ergm.ConstraintImplication
Set up the implied constraints from the current constraint
ergm-constraints
Sample Space Constraints for Exponential-Family Random Graph...
ergm.Cprepare
Internal Function to Prepare Data for ergm's C Interface
ergm.degeneracy
Checks an ergm Object for Degeneracy
ergm_deprecated
Functions that will no longer be supported in future releases...
ergm.eta
Operations with 'eta' vector of canonical parameter values...
ergm.exact
Calculate the exact loglikelihood for an ERGM
ergm_formula_utils
Internal Functions for Querying, Validating and Extracting...
ergm.geodistdist
calculate geodesic distance distribution for a network or...
ergm.getglobalstats
internal function to return global statistics for a given...
ergm.getMCMCsample
Internal Function to Sample Networks Using C Wrapper
ergm.init.methods
Set up the initial fitting methods for reference measure and...
ergm-internal
Internal ergm Objects
ergm-MetropolisHastingsProposals
Metropolis-Hastings Proposal Methods for ERGM MCMC
ergm.MHP.table
Table mapping reference,constraints, etc. to Metropolis...
ergm.mple
Find a maximizer to the psuedolikelihood function
ergmMPLE
ERGM Predictors and response for logistic regression...
ergm-package
Fit, Simulate and Diagnose Exponential-Family Models for...
ergm-parallel
Parallel Processing in the 'ergm' Package
ergm-references
Reference Measures for Exponential-Family Random Graph Models
ergm-terms
Terms used in Exponential Family Random Graph Models
eut-upgrade
Updating 'ergm.userterms' prior to 3.1
faux.desert.high
Faux desert High School as a network object
faux.dixon.high
Faux dixon High School as a network object
faux.magnolia.high
Goodreau's Faux Magnolia High School as a network object
faux.mesa.high
Goodreau's Faux Mesa High School as a network object
fix.curved
Convert a curved ERGM into a corresponding "fixed" ERGM.
flobusiness
Florentine Family Business Ties Data as a "network" object
flomarriage
Florentine Family Marriage Ties Data as a "network" object
florentine
Florentine Family Marriage and Business Ties Data as a...
g4
Goodreau's four node network as a "network" object
get.free.dyads
Create a network containing only edges meeting a specific...
get.node.attr
Retrieve and check assumptions about vertex attributes (nodal...
Getting.Started
Getting Started with "ergm": Fit, simulate and diagnose...
gof.ergm
Conduct Goodness-of-Fit Diagnostics on a Exponential Family...
is.curved
Testing for curved exponential family
is.durational
Testing for durational dependent models
is.dyad.independent
Testing for dyad-independence
is.inCH
Determine whether a vector is in the closure of the convex...
kapferer
Kapferer's tailor shop data
lasttoggle
Storing last toggle information in a network
logLik.ergm
A 'logLik' method for 'ergm'.
mcmc.diagnostics.ergm
Conduct MCMC diagnostics on an ergm fit
mcmc.list_utils
utility operations for mcmc.list objects
MHproposal
Functions to initialize the MHproposal object
molecule
Synthetic network with 20 nodes and 28 edges
network.update
Replaces the sociomatrix in a network object
newnw.extract
Internal function to create a new network from the ergm MCMC...
nvattr.copy.network
Copy network- and vertex-level attributes between two network...
plot.ergm
Plotting Method for class ergm
plot.gofobject
Plot Goodness-of-Fit Diagnostics on a Exponential Family...
plot.network.ergm
Two-Dimensional Visualization of Networks
print.ergm
Exponential Random Graph Models
samplk
Longitudinal networks of positive affection within a...
sampson
Cumulative network of positive affection within a monastery...
san
Use Simulated Annealing to attempt to match a network to a...
search.ergmTerms
Search the ergm-terms documentation for appropriate terms
simulate.ergm
Draw from the distribution of an Exponential Family Random...
standardize.network
Copy a network object enforcing ergm-appropriate guarantees...
summary.ergm
Summarizing ERGM Model Fits
summary.gofobject
Summaries the Goodness-of-Fit Diagnostics on a Exponential...
summary.network.list
Summarizing network.list objects
summary.statistics
Calculation of network or graph statistics
vcov.ergm
Extract Model Covariance Matrix
wtd.median
Weighted Median

Files in this package

ergm
ergm/BUGS
ergm/inst
ergm/inst/CITATION
ergm/inst/NEWS.Rd
ergm/inst/doc
ergm/inst/doc/ergm.R
ergm/inst/doc/ergm.pdf
ergm/inst/doc/ergm.Rnw
ergm/inst/include
ergm/inst/include/wtedgetree.h
ergm/inst/include/wtMHproposal.h
ergm/inst/include/MCMC.h
ergm/inst/include/changestat.h
ergm/inst/include/README
ergm/inst/include/model.h
ergm/inst/include/wtchangestat.h
ergm/inst/include/ergm_stubs.c
ergm/inst/include/MHproposal.h
ergm/inst/include/edgelist.h
ergm/inst/include/wtmodel.h
ergm/inst/include/edgetree.h
ergm/inst/include/wtMCMC.h
ergm/tests
ergm/tests/Rplots.pdf
ergm/tests/termTests.bipartite.R
ergm/tests/misc_tests.R
ergm/tests/valued_terms.R
ergm/tests/mple_offset.R
ergm/tests/constrain_blockdiag.R
ergm/tests/testgflomiss.R
ergm/tests/target_offset.R
ergm/tests/termTests.flexible.R
ergm/tests/parallel.R
ergm/tests/simpletests.R
ergm/tests/mle_offset.R
ergm/tests/mple_largenetwork.R
ergm/tests/valued_sim.R
ergm/tests/termTests.b12factor.R
ergm/tests/flomarkov.R
ergm/tests/constrain_observed.R
ergm/tests/testrank3d.RData
ergm/tests/nodrop.R
ergm/tests/drop_tests.R
ergm/tests/stocapprox.R
ergm/tests/miss_tests.R
ergm/tests/requireNamespaceTest.R
ergm/tests/constraint_conflict.R
ergm/tests/termTests.valued.R
ergm/tests/steppingtest.R
ergm/tests/utils_tests.R
ergm/tests/gw_sp_tests.R
ergm/tests/estflo.R
ergm/tests/hamming_termtests.R
ergm/tests/runtime_diags.R
ergm/tests/mple_target.stats.R
ergm/tests/testnet3u.RData
ergm/tests/nodemix.R
ergm/tests/constrain_degrees.R
ergm/tests/termTests.undirected.R
ergm/tests/testnet3d.RData
ergm/tests/termTests.directed.R
ergm/tests/miss_tests.CD.R
ergm/tests/ergm.mixed.R
ergm/tests/ergm_term_doc_test.R
ergm/tests/ergmMPLEtest.R
ergm/tests/termTests.b12nodematch.R
ergm/tests/testgmonkmiss.R
ergm/tests/constraint_generalized.R
ergm/tests/ergm.update.formula.R
ergm/tests/scoping.R
ergm/tests/fix.curved.R
ergm/src
ergm/src/wtedgetree.h
ergm/src/changestats_experimental.c
ergm/src/wtMHproposal.h
ergm/src/edgelist.c
ergm/src/changestat.c
ergm/src/netstats.c
ergm/src/changestats_coincidence.c
ergm/src/changestats_indices.c
ergm/src/MHproposal.c
ergm/src/wtchangestats.c
ergm/src/changestats_transitiveties.c
ergm/src/wtSAN.h
ergm/src/CD.h
ergm/src/MHproposals_bipartite.h
ergm/src/wtnetstats.c
ergm/src/MCMC.h
ergm/src/wtCD.c
ergm/src/changestats_coincidence.h
ergm/src/changestats_concurrentties.h
ergm/src/changestats_transitiveties.h
ergm/src/MPLEconddeg.c
ergm/src/MHproposals.c
ergm/src/changestats.h
ergm/src/wtMHproposal.c
ergm/src/netstats.h
ergm/src/changestat.h
ergm/src/geodist.c
ergm/src/changestats_indices.h
ergm/src/wtCD.h
ergm/src/MPLE.c
ergm/src/model.h
ergm/src/wtMHproposals.c
ergm/src/wtchangestat.h
ergm/src/changestats.dgw_sp.c
ergm/src/conddegmple.h
ergm/src/MPLEconddeg.h
ergm/src/wtnetstats.h
ergm/src/changestats_concurrentties.c
ergm/src/changestats.dgw_sp.h
ergm/src/changestats_internal.c
ergm/src/MHproposals_degree.c
ergm/src/MHproposal.h
ergm/src/changestats_internal.h
ergm/src/changestats_experimental.h
ergm/src/edgelist.h
ergm/src/changestats_homoproportion.h
ergm/src/geodist.h
ergm/src/model.c
ergm/src/MCMC.c
ergm/src/MHproposals_block.h
ergm/src/changestats.c
ergm/src/wtmodel.h
ergm/src/wtedgetree.c
ergm/src/MPLE.h
ergm/src/MHproposals.h
ergm/src/wtSAN.c
ergm/src/CD.c
ergm/src/conddegmple.c
ergm/src/wtchangestats.h
ergm/src/allstatistics.c
ergm/src/MHproposals_degree.h
ergm/src/edgetree.h
ergm/src/MHproposals_bipartite.c
ergm/src/wtMCMC.h
ergm/src/MHproposals_block.c
ergm/src/wtMHproposals.h
ergm/src/SAN.c
ergm/src/wtMCMC.c
ergm/src/wtmodel.c
ergm/src/changestats_homoproportion.c
ergm/src/edgetree.c
ergm/src/SAN.h
ergm/NAMESPACE
ergm/data
ergm/data/faux.desert.high.RData
ergm/data/g4.RData
ergm/data/faux.magnolia.high.RData
ergm/data/sampson.RData
ergm/data/faux.magnolia.high.withnumericattributes.RData
ergm/data/fauxhigh.withnumericattributes.RData
ergm/data/kapferer.RData
ergm/data/faux.mesa.high.RData
ergm/data/faux.dixon.high.RData
ergm/data/faux.mesa.high.withnumericattributes.RData
ergm/data/datalist
ergm/data/florentine.RData
ergm/data/ecoli.RData
ergm/data/samplk.RData
ergm/data/molecule.RData
ergm/R
ergm/R/InitErgmTerm.coincidence.R
ergm/R/summary.ergm.R
ergm/R/ergm.getglobalstats.R
ergm/R/ergmMPLE.R
ergm/R/InitMHP.R
ergm/R/ergm.design.R
ergm/R/InitMHP.blockdiag.R
ergm/R/ergm.curved.statsmatrix.R
ergm/R/ergm.MCMCse.lognormal.R
ergm/R/gof.ergm.R
ergm/R/ergm.getCDsample.R
ergm/R/ergm.mple.R
ergm/R/ergm.R
ergm/R/anova.ergm.R
ergm/R/ergm.getmodel.R
ergm/R/is.inCH.R
ergm/R/ergm.getterms.R
ergm/R/ergm.CD.fixed.R
ergm/R/InitErgmTerm.dgw_sp.R
ergm/R/logLik.ergm.R
ergm/R/ergm.stepping.R
ergm/R/ergm.MCMCse.R
ergm/R/InitErgmTerm.indices.R
ergm/R/InitReferences.R
ergm/R/midarrow.R
ergm/R/MHproposal.R
ergm/R/simulate.ergm.R
ergm/R/coef.ergm.R
ergm/R/ergm.stocapprox.R
ergm/R/ergm.degeneracy.R
ergm/R/mcmc.diagnostics.ergm.R
ergm/R/ergm.etagradmult.R
ergm/R/ergm.geodistn.R
ergm/R/summary.network.list.R
ergm/R/mvmodel.R
ergm/R/ergm.mapl.R
ergm/R/ergm.bridge.R
ergm/R/InitErgmTerm.bipartite.degree.R
ergm/R/anova.ergmlist.R
ergm/R/ergm.coefficient.degeneracy.R
ergm/R/build_term_index.R
ergm/R/get.node.attr.R
ergm/R/delete.isolates.R
ergm/R/ergm.san.R
ergm/R/control.logLik.ergm.R
ergm/R/wtd.median.R
ergm/R/is.dyad.independent.R
ergm/R/control.san.R
ergm/R/InitConstraint.R
ergm/R/ergm.robmon.R
ergm/R/ergm.pen.glm.R
ergm/R/formula.utils.R
ergm/R/parallel.utils.R
ergm/R/ergm.maple.R
ergm/R/ergm.initialfit.R
ergm/R/ergm.eta.R
ergm/R/print.ergm.R
ergm/R/ergm.phase12.R
ergm/R/check.ErgmTerm.R
ergm/R/ergm.sociality.R
ergm/R/approx.hotelling.diff.test.R
ergm/R/ergm.Cprepare.R
ergm/R/InitErgmTermcondegmple.R
ergm/R/InitErgmTerm.R
ergm/R/summary.statistics.network.R
ergm/R/ergm.logitreg.R
ergm/R/control.ergm.R
ergm/R/as.network.numeric.R
ergm/R/ergm.reviseinit.R
ergm/R/InitErgm.bipartite.R
ergm/R/ergm.bounddeg.R
ergm/R/InitErgmTerm.transitiveties.R
ergm/R/WtReferences.R
ergm/R/control.gof.R
ergm/R/ergm.etamap.R
ergm/R/print.network.list.R
ergm/R/ergm.getnetwork.R
ergm/R/robust.inverse.R
ergm/R/control.simulate.R
ergm/R/InitErgmTerm.extra.R
ergm/R/ergm.llik.obs.R
ergm/R/ergm.allstats.R
ergm/R/control.ergm.bridge.R
ergm/R/InitWtMHP.R
ergm/R/ergm.mahalanobis.R
ergm/R/ergm.getMCMCsample.R
ergm/R/print.summary.ergm.R
ergm/R/network.update.R
ergm/R/ergm.MCMLE.R
ergm/R/InitWtErgmTerm.R
ergm/R/ergm.estimate.R
ergm/R/ergm.sufftoprob.R
ergm/R/ergm.utility.R
ergm/R/plot.ergm.R
ergm/R/is.curved.R
ergm/R/ergm.pl.R
ergm/R/ergm.check.R
ergm/R/zzz.R
ergm/R/ergm.etagrad.R
ergm/R/plot.network.ergm.R
ergm/R/ergm.llik.R
ergm/R/is.durational.R
ergm/R/ergm.model.utils.R
ergm/vignettes
ergm/vignettes/ergm.Rnw
ergm/vignettes/ergm-term-crossRef.html
ergm/vignettes/ergm-term-crossRef.Rmd
ergm/MD5
ergm/build
ergm/build/vignette.rds
ergm/DESCRIPTION
ergm/man
ergm/man/get.node.attr.Rd
ergm/man/plot.network.ergm.Rd
ergm/man/molecule.Rd
ergm/man/as.edgelist.Rd
ergm/man/search.ergmTerms.Rd
ergm/man/enformulate.curved.Rd
ergm/man/Getting.Started.Rd
ergm/man/is.dyad.independent.Rd
ergm/man/summary.gofobject.Rd
ergm/man/ergm.MHP.table.Rd
ergm/man/is.durational.Rd
ergm/man/simulate.ergm.Rd
ergm/man/flomarriage.Rd
ergm/man/san.Rd
ergm/man/coef.length.model.Rd
ergm/man/ergm-MetropolisHastingsProposals.Rd
ergm/man/ergm.degeneracy.Rd
ergm/man/ecoli.Rd
ergm/man/control.logLik.ergm.Rd
ergm/man/ergm-internal.Rd
ergm/man/nvattr.copy.network.Rd
ergm/man/lasttoggle.Rd
ergm/man/vcov.ergm.Rd
ergm/man/as.network.numeric.Rd
ergm/man/plot.ergm.Rd
ergm/man/flobusiness.Rd
ergm/man/ergm.getglobalstats.Rd
ergm/man/ergm.allstats.Rd
ergm/man/wtd.median.Rd
ergm/man/approx.hotelling.diff.test.Rd
ergm/man/ergm.ConstraintImplication.Rd
ergm/man/ergm_formula_utils.Rd
ergm/man/mcmc.list_utils.Rd
ergm/man/summary.statistics.Rd
ergm/man/florentine.Rd
ergm/man/kapferer.Rd
ergm/man/print.ergm.Rd
ergm/man/ergm.exact.Rd
ergm/man/is.curved.Rd
ergm/man/ergm.eta.Rd
ergm/man/samplk.Rd
ergm/man/ergm-package.Rd
ergm/man/coef.ergm.Rd
ergm/man/MHproposal.Rd
ergm/man/newnw.extract.Rd
ergm/man/ergm-parallel.Rd
ergm/man/ergm.init.methods.Rd
ergm/man/control.simulate.ergm.Rd
ergm/man/faux.dixon.high.Rd
ergm/man/control.ergm.bridge.Rd
ergm/man/ergm-terms.Rd
ergm/man/mcmc.diagnostics.ergm.Rd
ergm/man/network.update.Rd
ergm/man/control.ergm.Rd
ergm/man/get.free.dyads.Rd
ergm/man/anova.ergm.Rd
ergm/man/degreedist.Rd
ergm/man/plot.gofobject.Rd
ergm/man/sampson.Rd
ergm/man/ergm-references.Rd
ergm/man/ergm_deprecated.Rd
ergm/man/standardize.network.Rd
ergm/man/check.ErgmTerm.Rd
ergm/man/is.inCH.Rd
ergm/man/control.gof.Rd
ergm/man/faux.desert.high.Rd
ergm/man/ergmMPLE.Rd
ergm/man/faux.magnolia.high.Rd
ergm/man/ergm.bounddeg.Rd
ergm/man/ergm-constraints.Rd
ergm/man/ergm.bridge.llr.Rd
ergm/man/g4.Rd
ergm/man/faux.mesa.high.Rd
ergm/man/ergm.getMCMCsample.Rd
ergm/man/eut-upgrade.Rd
ergm/man/logLik.ergm.Rd
ergm/man/ergm.geodistdist.Rd
ergm/man/ergm.mple.Rd
ergm/man/ergm.bridge.dindstart.llk.Rd
ergm/man/gof.ergm.Rd
ergm/man/ergm.Cprepare.Rd
ergm/man/ergm.Rd
ergm/man/control.san.Rd
ergm/man/summary.network.list.Rd
ergm/man/summary.ergm.Rd
ergm/man/fix.curved.Rd
ergm/LICENSE