reports_to_incidence: Infer incidence from reports via a series of deconvolutions

In ern: Effective Reproduction Number Estimation

Infer incidence from reports via a series of deconvolutions

Description

Infer incidence from reports via a series of deconvolutions

Usage

reports_to_incidence(
  reports.daily,
  reporting.delay,
  incubation.period,
  max.iter = 9,
  silent = FALSE
)

Arguments

reports.daily	Data frame. Daily report counts. Includes at least date and value columns.
reporting.delay	List. Parameters for a single reporting delay distribution, as generated by sample_a_dist().
incubation.period	List. Parameters for a single incubation period distribution, as generated by sample_a_dist().
max.iter	Numeric. Maximum number of Richardson-Lucy iterations.
silent	Logical. Flag to suppress all output messages, warnings, and progress bars.

ern documentation built on April 4, 2025, 2:13 a.m.