summarise_report_counts: Summarise daily inferred reports based on original reporting...

In ern: Effective Reproduction Number Estimation

Summarise daily inferred reports based on original reporting schedule and calculate error

Description

Summarise daily inferred reports based on original reporting schedule and calculate error

Usage

summarise_report_counts(df, prm.daily.check)

Arguments

df

Data frame. As output by get_use_dates().

prm.daily.check

List. Parameters for checking aggregated to daily report inference. Elements include: agg.reldiff.tol: numerical tolerance (%) for relative error between aggregated inferred daily reports and original aggregated reports; chronological observations are dropped until this tolerance is first acheived (convergence at the start of the timeseries is often the worst, need to maintain uninterrupted daily timeseries for input into Rt calculation). Set this entire argument to NULL to use inferred daily reports as is.

Value

Data frame

ern documentation built on April 4, 2025, 2:13 a.m.