deconv_ww_inc: Deconvoluting Wastewater Data to Incidence

In ern: Effective Reproduction Number Estimation

Deconvoluting Wastewater Data to Incidence

Description

Function estimates incidence from smoothed data

Usage

deconv_ww_inc(d, fec, scaling.factor, silent, RL.max.iter)

Arguments

d	Data frame. Wastewater dataframe. Must include at least date, time t and obs columns.
fec	List. Parameters for a single fecal shedding distribution, as generated by sample_a_dist().
scaling.factor	Numeric. Scaling from wastewater concentration to prevalence. This value may be assumed or independently calibrated to data.
silent	Logical. Flag to suppress all output messages, warnings, and progress bars.
RL.max.iter	Integer. Maximum of iterations for the Richardson-Lucy deconvolution algorithm.

Value

Data frame with deconvoluted incidence

ern documentation built on April 4, 2025, 2:13 a.m.