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knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.align = "center", fig.height = 4, fig.width = 5 )
library(eulerr)
This vignette serves as a gallery for Euler diagrams and as a showcase of the various options for customization that are available.
uniform_intersections <- euler(c("A" = 10, "B" = 10, "C" = 10, "A&B" = 4, "A&C" = 4, "B&C" = 4, "A&B&C" = 2)) plot(uniform_intersections)
disjoint_sets <- euler(c(A = 1, B = 1, C = 1)) plot(disjoint_sets, labels = c("Tom", "Greg", "Alberta"), edges = list(lty = 1:3))
completely_contained <- euler(c("A" = 15, "B" = 15, "C" = 0, "A&B" = 3, "A&C" = 0, "B&C" = 0, "A&B&C" = 3)) plot(completely_contained, labels = list(col = c("white", "black", "black")), edges = list(col = "white", lex = 2), fills = c("black", "cyan", "orange"))
intersecting_inside <- euler(c("A" = 15, "B" = 0, "C" = 0, "A&B" = 3, "A&C" = 3, "B&C" = 0, "A&B&C" = 2)) plot(intersecting_inside, fills = list(fill = c("lavenderblush2", "lightblue2", "lightsalmon", "", "", "", "plum2")), legend = list(side = "right"))
one_contained <- euler(c("A" = 7, B = 6, C = 0, "A&B" = 0, "A&C" = 1, "B&C" = 1, "A&B&C" = 2), shape = "ellipse") plot(one_contained, quantities = list(type = "percent"))
Sets intersecting inside other sets.
russian_doll <- euler(c("A" = 15, "B" = 0, C = 0, "A&B" = 10, "A&C" = 0, "B&C" = 0, "A&B&C" = 5)) plot(russian_doll)
This set relationship is taken from Wilkinson et al. It works best with ellipses.
wilkinson <- euler(c(A = 4, B = 6, C = 3, D = 2, E = 7, F = 3, "A&B" = 2, "A&F" = 2, "B&C" = 2, "B&D" = 1, "B&F" = 2, "C&D" = 1, "D&E" = 1, "E&F" = 1, "A&B&F" = 1, "B&C&D" = 1), shape = "ellipse") plot(wilkinson, labels = list(fontfamily = "serif"), edges = list(lty = 3), quantities = list(type = "percent", font = 3))
genes <- euler(c("SE" = 13, "Treat" = 28, "Anti-CCP" = 101, "DAS28" = 91, "SE&Treat" = 1, "SE&DAS28" = 14, "Treat&Anti-CCP" = 6, "SE&Anti-CCP&DAS28" = 1)) plot(genes, quantities = list(type = c("percent", "counts")))
three_inside_fourth <- euler(c("A" = 30, "A&B" = 3, "A&C" = 3, "A&D" = 3, "A&B&C" = 2, "A&B&D" = 2, "A&C&D" = 2, "A&B&C&D" = 1)) plot(three_inside_fourth)
A combination taken from the eulerAPE article.
eulerape <- euler(c("a" = 3491, "b" = 3409, "c" = 3503, "a&b" = 120, "a&c" = 114, "b&c" = 132, "a&b&c" = 126), shape = "ellipse", control = list(extraopt = FALSE)) plot(eulerape)
uniform <- euler(c("A" = 10, "B" = 10, "C" = 10, "D" = 10, "A&B" = 3, "A&C" = 3, "A&D" = 0, "B&C" = 0, "B&D" = 3, "C&D" = 3, "A&B&C" = 1, "A&B&D" = 1, "A&C&D" = 1, "B&C&D" = 1, "A&B&C&D" = 1)) plot(uniform, labels = list(labels = c("Frodo", "Sam", "Merry", "Pippin"), font = 1:4, col = 1:4, cex = seq(1, 1.5, length.out = 4)))
two_overlapping <- euler(c("A" = 0, "B" = 0, "A&B" = 10)) plot(two_overlapping)
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