Description Usage Arguments Value Author(s) References Examples
When assembling data from different sources typos can sometimes cause a loss of perfect matches between trees and datasets. This function helps you find these close matches that can be hand curated to keep as many species as possible in your analysis.
1 | FuzzyMatch(tree, data, max.dist)
|
tree |
a phylogenetic tree of the class "phylo". |
data |
character vector with the names from your dataset. |
max.dist |
This is the maximum number of characters that can differ between your tree and data and still be recognized as a close match. |
A dataframe with the following rows:
Name in data
Name in tree
Number of differences
Heath Blackmon
http://coleoguy.github.io/
1 2 3 4 |
sh: 1: cannot create /dev/null: Permission denied
sh: 1: cannot create /dev/null: Permission denied
Found 3 names that were close but imperfect matches
name.in.data name.in.tree differences
1 Pheidele_lucreti Pheidole_lucretii 2
2 Meliturgula_scriptifronsi Meliturgula_scriptifrons 1
3 Andrena_afimbriat Andrena_afimbriata 1
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