exact2x2: Exact Tests and Confidence Intervals for 2x2 Tables
Version 1.5.2

Calculates conditional exact tests (Fisher's exact test, Blaker's exact test, or exact McNemar's test) and unconditional exact tests (including score-based tests on differences in proportions, ratios of proportions, and odds ratios, and Boshcloo's test) with appropriate matching confidence intervals, and provides power and sample size calculations. Also gives melded confidence intervals for the binomial case.

Browse man pages Browse package API and functions Browse package files

AuthorMichael P. Fay, Sally A. Hunsberger
Date of publication2017-02-16 22:40:11
MaintainerMichael P. Fay <mfay@niaid.nih.gov>
LicenseGPL-3
Version1.5.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("exact2x2")

Man pages

binomMeldtest: Melded Binomial Confidence Intervals and Tests
boschloo: Boschloo's test for 2x2 Tables
calcTall: Calculate all Tstat for all values of the (n1+1) X (n2+1)...
constrMLE: Calculate constrained MLEs.
exact2x2: Exact Conditional Tests for 2 by 2 Tables of Count Data
exact2x2-internal: Internal functions for exact2x2. Not to be called by user.
exact2x2-package: Exact Tests and Confidence Intervals for 2x2 Tables
exact2x2Plot: Plot p-value function for one 2 by 2 table.
pickTstat: Pick T statistic (ordering function) for unconditional exact...
plotT: Plot or Print ordering function for unconditional exact test
power2grid: Create grid for root search.
power2x2: Calculate exact power or sample size for conditional tests...
ucControl: Algorithm variables used by uncondExact2x2.
uncondExact2x2: Unconditional exact tests for 2x2 tables
uncondExact2x2-internal: Internal functions for unconditional exact tests.
uncondPower2x2: Calculate power or sample size for any 2x2 test.
unirootGrid: Function to find a root by grid search.

Functions

Power2x2 Man page Source code
SS2x2 Man page Source code
binomMeld.test Man page Source code
binomMeldCalcInt Man page Source code
binomMeldCalcMC Man page Source code
blaker.exact Man page
boschloo Man page Source code
calcTall Man page Source code
constrMLE Man page
constrMLE.difference Man page Source code
constrMLE.oddsratio Man page Source code
constrMLE.ratio Man page Source code
createR Man page Source code
exact2x2 Man page
exact2x2-package Man page Man page
exact2x2CI Man page Source code
exact2x2Plot Man page Source code
exact2x2Pvals Man page
fillsquare Man page Source code
fisher.exact Man page
fisherCalcMidp Man page Source code
getColor Man page Source code
getDeltaGrid Man page Source code
getPDQD Man page Source code
getPI Man page Source code
getPrange Man page Source code
mcnemar.exact Man page
mcnemar.exact.calc Man page Source code
orderMat Man page Source code
orderMat.function Man page Man page Source code
orderMat.numeric Man page Man page Source code
pickTstat Man page Source code
plotRankMat Man page Source code
plotT Man page Source code
plotT.function Man page Man page Source code
plotT.numeric Man page Man page Source code
power2grid Man page Man page Source code
power2gridDifference Man page Source code
power2gridRatio Man page Source code
power2x2 Man page Source code
powerUncondExact2x2 Source code
ss2x2 Man page Source code
ucControl Man page Source code
uncondExact2x2 Man page Source code
uncondExact2x2Pvals Man page Source code
uncondPower2x2 Man page Source code
unirootGrid Man page Source code

Files

inst
inst/CITATION
inst/slowTests
inst/slowTests/test_EplusM.R
inst/slowTests/test_binomMeldtest.R
inst/slowTests/test_StatXact.R
inst/slowTests/test_OddsRatioScore.R
inst/slowTests/test_SAS.R
inst/doc
inst/doc/exact2x2Validation.pdf
inst/doc/exact2x2Validation.Rnw
inst/doc/unconditionalExact2x2Tests.Rnw
inst/doc/exact2x2.pdf
inst/doc/unconditionalExact2x2Tests.pdf
inst/doc/unconditionalExact2x2Tests.R
inst/doc/exactMcNemar.R
inst/doc/exactMcNemar.pdf
inst/doc/exact2x2.Rnw
inst/doc/CalculationDetailsBinomialMeldTest.pdf
inst/doc/midpAdjustment.pdf
inst/doc/midpAdjustment.Rnw
inst/doc/midpAdjustment.R
inst/doc/exactMcNemar.Rnw
inst/doc/fay2009MatchingCI.pdf
inst/doc/exact2x2.R
tests
tests/testthat.R
tests/testthat
tests/testthat/test_FisherAdj.R
tests/testthat/test_Exact.R
tests/testthat/test_midpConditional.R
tests/testthat/test_zerozero.R
NAMESPACE
R
R/power2x2.R
R/rankPlots.R
R/powerUncondExact2x2.R
R/binomMeld.test.R
R/ss2x2.R
R/exact2x2Plot.R
R/blaker.exact.R
R/exact2x2Pvals.R
R/uncondPower2x2.R
R/fisher.exact.R
R/fisherCalcMidp.R
R/mcnemar.exact.calc.R
R/exact2x2CI.R
R/mcnemar.exact.R
R/exact2x2.R
R/boschloo.R
R/uncondExact2x2.R
vignettes
vignettes/exact2x2Validation.Rnw
vignettes/unconditionalExact2x2Tests.Rnw
vignettes/exact2x2.Rnw
vignettes/midpAdjustment.Rnw
vignettes/exactMcNemar.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/exact2x2Plot.Rd
man/binomMeldtest.Rd
man/exact2x2-package.Rd
man/uncondExact2x2-internal.Rd
man/ucControl.Rd
man/unirootGrid.Rd
man/pickTstat.Rd
man/plotT.Rd
man/boschloo.Rd
man/exact2x2-internal.Rd
man/constrMLE.Rd
man/power2grid.Rd
man/uncondPower2x2.Rd
man/power2x2.Rd
man/uncondExact2x2.Rd
man/exact2x2.Rd
man/calcTall.Rd
exact2x2 documentation built on May 19, 2017, 11:40 p.m.