| exdqlm-package | R Documentation |
Bayesian quantile-regression tools for dynamic state-space models and static regression under the extended asymmetric Laplace error distribution (exAL).
The package centers on native dynamic quantile state-space modeling for
univariate time series and also provides a static exAL regression workflow.
Across these settings, exdqlm combines model
construction helpers, multiple Bayesian inference engines, shrinkage priors
for static coefficients, and post hoc synthesis of several fitted quantiles.
Dynamic/state-space quantile modeling via
exdqlmLDVB() and exdqlmMCMC(), with legacy exdqlmISVB()
retained for backward compatibility and transfer-function extensions
through exdqlmTransferLDVB(), exdqlmTransferMCMC(), and legacy
exdqlmTransferISVB(). Dynamic fitted objects support standard
plot(), predict(), and diagnostics() methods, with
exdqlmPlot(), compPlot(), exdqlmForecast(), and the named
diagnostic helpers retained as explicit helpers.
Static Bayesian exAL regression via exalStaticLDVB() and
exalStaticMCMC(), with fitted-quantile plots through plot() and
static diagnostics through diagnostics().
Modular state-space construction via polytrendMod(), seasMod(),
and regMod().
Multi-quantile post-processing via
quantileSynthesis() for post hoc posterior-predictive
synthesis from separately fitted quantiles into a unified
predictive distribution.
Model specifications have class exdqlm and can be combined with
the + method.
Dynamic fitted objects keep their engine-specific first class
(exdqlmLDVB, exdqlmMCMC, or legacy exdqlmISVB) and also inherit
from the shared exdqlmFit family. They support print(),
summary(), plot(), and predict() where natural.
Static fitted objects keep their engine-specific first class
(exalStaticLDVB or exalStaticMCMC) and also inherit from the
shared exalStaticFit family. They support print(), summary(),
fitted-quantile plot(), and diagnostics() methods.
Post-processing functions return explicit objects:
exdqlmDiagnostic, exdqlmForecast, exdqlmForecastDiagnostic,
exdqlmSynthesis, and exalStaticDiagnostic. These objects can be
inspected with standard print()/summary() methods and plotted
with plot() when a display is defined.
Dynamic Bayesian quantile state-space inference with Laplace-delta variational Bayes (LDVB) as the main variational Bayes (VB) engine, Markov chain Monte Carlo (MCMC) for posterior simulation, and legacy importance-sampling variational Bayes (ISVB) retained for compatibility and historical comparisons.
A unified package covering both dynamic exDQLM models and static exAL regression.
Static shrinkage priors including ridge, regularized horseshoe
("rhs"), and rhs_ns.
Reduced AL/DQLM paths through dqlm.ind = TRUE in both dynamic and
static APIs.
Standardized VB diagnostics traces via
fit$diagnostics$vb_trace for the evidence lower bound (ELBO),
sigma, gamma, and convergence deltas across VB engines.
Conservative automatic warmup defaults for the most failure-prone
shared blocks: RHS-family tau scheduling plus exAL
(sigma, gamma) warmup in VB and MCMC entry points, with explicit
controls available only when users need to override the defaults.
Optional C++ acceleration for selected state-space computations.
Shared fit class families were added while preserving the existing
first-class object names: dynamic fits inherit from exdqlmFit, and
static fits inherit from exalStaticFit.
Fitted-model and post-processing objects have standardized
print() and summary() methods for inspecting object type, engine,
dimensions, stored draws, diagnostics, and run time.
Dynamic fits support standard plot(), predict(), and
diagnostics() methods; forecast and static-fit diagnostics use the
same diagnostics() generic where defined.
Dynamic diagnostics report CRPS through a finite integrated
quantile-score approximation over posterior predictive empirical
quantiles, with user-configurable quantile levels and weights in
exdqlmDiagnostics().
Held-out forecast diagnostics are available for forecast objects
through diagnostics().
Static diagnostics store fitted-quantile summaries and coefficient
intervals, with plot(..., type = "coefficients") available for
comparing static LDVB and MCMC coefficient summaries.
Dynamic KL normality diagnostics are deterministic for fixed fitted
objects and no longer depend on stochastic reference samples. The
top-level diagnostic object exposes KL as the primary calibration
diagnostic and keeps advanced KL sensitivity details under
kl.details.
options(exdqlm.use_cpp_kf = TRUE|FALSE) – C++ Kalman bridge (optional; default TRUE).
options(exdqlm.compute_elbo = TRUE|FALSE) – Compute ELBO (optional; default TRUE).
options(exdqlm.tol_elbo = numeric) – Positive ELBO convergence tolerance used when
exdqlm.compute_elbo = TRUE; smaller values enforce stricter ELBO stabilization checks
(default 1e-6).
options(exdqlm.use_cpp_builders = TRUE|FALSE) – C++ model builders (optional; default FALSE).
options(exdqlm.use_cpp_samplers = TRUE|FALSE) – C++ samplers (optional; default FALSE).
options(exdqlm.use_cpp_postpred = TRUE|FALSE) – C++ posterior predictive sampler (optional; default FALSE).
options(exdqlm.use_cpp_mcmc = TRUE|FALSE) – MCMC backend routing (optional; default TRUE).
options(exdqlm.cpp_mcmc_mode = "strict"|"fast") – strict keeps legacy R-kernel parity; fast enables C++ FFBS in MCMC (default "fast").
options(exdqlm.cpp_threads = numeric) – Positive integer thread cap for eligible
OpenMP-enabled C++ paths (1L forces single-thread; default 1L).
Maintainer: Raquel Barata raquel.a.barata@gmail.com
Authors:
Raquel Barata raquel.a.barata@gmail.com
Antonio Aguirre
Other contributors:
Raquel Prado [thesis advisor]
Bruno Sanso [thesis advisor]
Useful links:
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