fastqcr: Quality Control of Sequencing Data

'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.

Getting started

Package details

AuthorAlboukadel Kassambara [aut, cre]
MaintainerAlboukadel Kassambara <[email protected]>
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the fastqcr package in your browser

Any scripts or data that you put into this service are public.

fastqcr documentation built on Dec. 6, 2018, 9:04 a.m.