fastqc: Run FastQC Tool

In fastqcr: Quality Control of Sequencing Data

Description

Run FastQC Tool

Usage

fastqc(fq.dir = getwd(), qc.dir = NULL, threads = 4,
  fastqc.path = "~/bin/FastQC/fastqc")

Arguments

fq.dir	path to the directory containing fastq files. Default is the current working directory.
qc.dir	path to the FastQC result directory. If NULL, a directory named fastqc_results is created in the current working directory.
threads	the number of threads to be used. Default is 4.
fastqc.path	path to fastqc program

Value

Create a directory containing the reports

Examples

## Not run: 
# Run FastQC: generates a QC directory
fastqc(fq.dir)

## End(Not run)

fastqcr documentation built on May 2, 2019, 2:13 a.m.