qc_aggregate: Aggregate FastQC Reports for Multiple Samples

Description Usage Arguments Value Functions Examples

View source: R/qc_aggregate.R

Description

Aggregate multiple FastQC reports into a data frame.

Usage

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qc_aggregate(qc.dir = ".", progressbar = TRUE)

## S3 method for class 'qc_aggregate'
summary(object, ...)

qc_stats(object)

Arguments

qc.dir

path to the FastQC result directory to scan.

progressbar

logical value. If TRUE, shows a progress bar.

object

an object of class qc_aggregate.

...

other arguments.

Value

Functions

Examples

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# Demo QC dir
qc.dir <- system.file("fastqc_results", package = "fastqcr")
qc.dir

# List of files in the directory
list.files(qc.dir)

# Aggregate the report
qc <- qc_aggregate(qc.dir, progressbar = FALSE)
qc

# Generates a summary of qc_aggregate
summary(qc)

# General statistics of fastqc reports.
qc_stats(qc)

fastqcr documentation built on May 2, 2019, 2:13 a.m.