plot.Bioenergetic: Plot Bioenergetic object setup

In fb4package: 'Fish Bioenergetics 4.0' Model Implementation with High-Performance 'TMB' Backend

Plot Bioenergetic object setup

Description

Plotting method for Bioenergetic objects to validate setup before simulation.

Usage

## S3 method for class 'Bioenergetic'
plot(x, type = "dashboard", save_plot = NULL, ...)

Arguments

x	Object of class Bioenergetic
type	Type of plot: "dashboard", "temperature", "diet", "energy"
save_plot	Optional path to save plot
...	Additional arguments

Value

Invisibly returns the input object x, called for its plotting side-effect.

Examples

data(fish4_parameters)
sp   <- fish4_parameters[["Oncorhynchus tshawytscha"]]$life_stages$adult
info <- fish4_parameters[["Oncorhynchus tshawytscha"]]$species_info
bio  <- Bioenergetic(
  species_params     = sp,
  species_info       = info,
  environmental_data = list(
    temperature = data.frame(Day = 1:30, Temperature = rep(12, 30))
  ),
  diet_data = list(
    proportions = data.frame(Day = 1:30, Prey1 = 1.0),
    energies    = data.frame(Day = 1:30, Prey1 = 5000),
    prey_names  = "Prey1"
  ),
  simulation_settings = list(initial_weight = 100, duration = 30)
)
bio$species_params$predator$ED_ini <- 5000
bio$species_params$predator$ED_end <- 5500
plot(bio)
plot(bio, type = "temperature")

fb4package documentation built on May 8, 2026, 1:07 a.m.