process_bioenergetic_data: Process Bioenergetic object temporal data for simulation

In fb4package: 'Fish Bioenergetics 4.0' Model Implementation with High-Performance 'TMB' Backend

Process Bioenergetic object temporal data for simulation

Description

Version that processes all temporal data required for FB4 simulation. Includes better error handling and additional data types.

Usage

process_bioenergetic_data(bio_obj, first_day, last_day)

Arguments

bio_obj	Bioenergetic object (must be pre-validated)
first_day	First simulation day
last_day	Last simulation day

Value

A named list with ten elements containing the temporal arrays interpolated to each simulation day: temperature (numeric vector, °C), diet_proportions (numeric matrix, rows = days, columns = prey), prey_energies (numeric matrix, J/g), prey_indigestible (numeric matrix, fractions), reproduction (numeric vector, fractions), duration (integer, number of days), prey_names (character vector), first_day, last_day, and target_days (integer sequence of simulated days).

Examples

# Requires a fully-configured Bioenergetic object; see ?Bioenergetic
# bio <- Bioenergetic(...)
# temporal <- process_bioenergetic_data(bio, first_day = 1, last_day = 365)

fb4package documentation built on May 8, 2026, 1:07 a.m.