set_environment: Set Environmental Data for Bioenergetic Objects

In fb4package: 'Fish Bioenergetics 4.0' Model Implementation with High-Performance 'TMB' Backend

Set Environmental Data for Bioenergetic Objects

Description

Updates the environmental data component of a Bioenergetic object with new temperature information.

Usage

set_environment(x, temperature_data)

Arguments

x	Bioenergetic object
temperature_data	Data frame with Day and Temperature columns

Value

The Bioenergetic object x with its environmental_data$temperature component replaced by temperature_data (interpolated to fill missing days if needed), and fitted reset to FALSE.

Examples

bio <- Bioenergetic(
  species_params = list(
    consumption = list(CEQ = 1, CA = 0.303, CB = -0.275, CQ = 0.06)
  ),
  species_info  = list(common_name = "Example fish")
)
temp <- data.frame(Day = 1:365, Temperature = rep(15, 365))
bio <- set_environment(bio, temp)

fb4package documentation built on May 8, 2026, 1:07 a.m.