FamiliasLocus | R Documentation |
FamiliasLocus: a function for reading Familias locus data.
FamiliasLocus(
frequencies,
allelenames,
name,
MutationModel = "Stepwise",
MutationRate = 0,
MutationRange = 0.5,
MutationRate2 = 0,
MutationMatrix,
Stabilization = "None",
MaxStabilizedMutrate = 1,
femaleMutationModel,
femaleMutationRate,
femaleMutationRange,
femaleMutationRate2,
femaleMutationMatrix,
maleMutationModel,
maleMutationRate,
maleMutationRange,
maleMutationRate2,
maleMutationMatrix
)
frequencies |
allele frequencies |
allelenames |
names |
name |
system name |
MutationModel |
model |
MutationRate |
rates |
MutationRange |
range |
MutationRate2 |
rate two, applied for extended stepwise |
MutationMatrix |
matrix |
Stabilization |
stabilization factor |
MaxStabilizedMutrate |
mix factor |
femaleMutationModel |
for females |
femaleMutationRate |
rate |
femaleMutationRange |
range |
femaleMutationRate2 |
rate 2 |
femaleMutationMatrix |
females matrix |
maleMutationModel |
male matrix |
maleMutationRate |
male rate |
maleMutationRange |
male range |
maleMutationRate2 |
rate 2 |
maleMutationMatrix |
matrix |
Locus analysis.
frequencies <- c(0.1, 0.2, 0.3, 0.4)
allelenames <- c("A", "B", "C", "D")
marker <- FamiliasLocus(frequencies, allelenames)
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