fdrtool: Estimation of (Local) False Discovery Rates and Higher Criticism
Version 1.2.15

Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.

Browse man pages Browse package API and functions Browse package files

AuthorBernd Klaus and Korbinian Strimmer.
Date of publication2015-07-08 09:50:31
MaintainerKorbinian Strimmer <strimmerlab@gmail.com>
LicenseGPL (>= 3)
Version1.2.15
URL http://strimmerlab.org/software/fdrtool/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("fdrtool")

Man pages

censored.fit: Fit Null Distribution To Censored Data by Maximum Likelihood
dcor0: Distribution of the Vanishing Correlation Coefficient (rho=0)...
fdrtool: Estimate (Local) False Discovery Rates For Diverse Test...
fdrtool-internal: Internal fdrtool Functions
gcmlcm: Greatest Convex Minorant and Least Concave Majorant
grenander: Grenander Estimator of a Decreasing or Increasing Density
halfnorm: The Half-Normal Distribution
hc.score: Compute Empirical Higher Criticism Scores and Corresponding...
monoreg: Monotone Regression: Isotonic Regression and Antitonic...
pval.estimate.eta0: Estimate the Proportion of Null p-Values
pvalues: Example p-Values

Functions

approximate.fit Man page Source code
censored.fit Man page Source code
dcor0 Man page Source code
dhalfnorm Man page Source code
ecdf.pval Man page Source code
fdrtool Man page Source code
fitted.monoreg Man page Source code
fndr.cutoff Man page Source code
gcmlcm Man page Source code
get.nullmodel Man page Source code
grenander Man page Source code
halfnormal Man page
hc.score Man page Source code
hc.thresh Man page Source code
iqr.fit Man page Source code
monoreg Man page Source code
num.curv Man page Source code
pcor0 Man page Source code
phalfnorm Man page Source code
plot.grenander Man page Source code
plot.monoreg Man page Source code
pval.estimate.eta0 Man page Source code
pvalues Man page
pvt.fit.nullmodel Man page Source code
pvt.isoMean Man page Source code
pvt.nullfunction Man page
pvt.plotlabels Man page Source code
qcor0 Man page Source code
qhalfnorm Man page Source code
r2t Man page Source code
rcor0 Man page Source code
residuals.monoreg Man page Source code
rhalfnorm Man page Source code
sd2theta Man page Source code
t2r Man page Source code
theta2sd Man page Source code

Files

src
src/isomean.c
NAMESPACE
NEWS
data
data/pvalues.rda
R
R/grenander.R
R/dcor0.R
R/pval.estimate.eta0.R
R/censored.fit.R
R/ecdf.pval.R
R/nullmodel.R
R/gcmlcm.R
R/approximate.fit.R
R/fndr.cutoff.R
R/monoreg.R
R/hc.score.R
R/halfnorm.R
R/fdrtool.R
MD5
DESCRIPTION
man
man/grenander.Rd
man/halfnorm.Rd
man/pvalues.Rd
man/monoreg.Rd
man/fdrtool-internal.Rd
man/hc.score.Rd
man/gcmlcm.Rd
man/pval.estimate.eta0.Rd
man/censored.fit.Rd
man/dcor0.Rd
man/fdrtool.Rd
fdrtool documentation built on May 20, 2017, 12:53 a.m.