Nothing
## ----echo=FALSE-------------------------------------------
options(width=60,digits=3)
options(prompt="R> ")
library(knitr)
opts_chunk$set(fig.path="multistate-", linewidth=80)
hook_output = knit_hooks$get("output")
knit_hooks$set(output = function(x, options) {
# this hook is used only when the linewidth option is not NULL
if (!is.null(n <- options$linewidth)) {
x = knitr:::split_lines(x)
# any lines wider than n should be wrapped
if (any(nchar(x) > n))
x = strwrap(x, width = n)
x = paste(x, collapse = "\n")
}
hook_output(x, options)
})
## ---------------------------------------------------------
if (!require("msm"))
stop("The `msm` package should be installed
to run code in this vignette")
Qind <- rbind(c(0, 1, 0, 0),
c(0, 0, 1, 0),
c(0, 0, 0, 1),
c(0, 0, 0, 0))
psor.wide.msm <- msm(state ~ months, subject=ptnum, data=psor,
qmatrix = Qind, gen.inits=TRUE,
covariates = ~ollwsdrt+hieffusn)
psor.wide.msm
## ---------------------------------------------------------
inds <- rbind(
c(1,1,1,0,0,0,0,0,0),
c(1,1,1,0,0,0,0,0,1),
c(1,1,1,0,0,0,0,1,1),
c(1,1,1,0,0,0,1,1,1),
c(1,1,1,0,0,1,1,1,1),
c(1,1,1,0,1,1,1,1,1),
c(1,1,1,1,1,1,1,1,1)
)
## ---------------------------------------------------------
totlos.msm(psor.wide.msm, covariates=0, tot=10)
## ---------------------------------------------------------
focus_tlos <- function(par){
x.new <- updatepars.msm(psor.wide.msm, par)
totlos.msm(x.new, covariates=0, tot=10)["State 4"]
}
## ---------------------------------------------------------
library(fic)
fic(wide=psor.wide.msm, inds=inds, focus=focus_tlos)
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