flan: FLuctuation ANalysis on Mutation Models
Version 0.5

Tools for fluctuations analysis of mutant cells counts.

AuthorAdrien Mazoyer [aut, cre], Remy Drouilhet [aut], Stephane Despreaux [aut], Bernard Ycart [aut]
Date of publication2017-05-23 10:45:32 UTC
MaintainerAdrien Mazoyer <Adrien.Mazoyer@univ-grenoble-alpes.fr>
LicenseGPL
Version0.5
URL https://www.r-project.org https://github.com/AdriMaz/flan BugReports: https://github.com/AdriMaz/flan/issues
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("flan")

Getting started

Package overview

Popular man pages

boeal: Number of nalidixic acid-resistant mutants from Boe et al....
david: Mutant counts and final numbers from H. L. David (1970)
draw.clone: Graphic representation of clone growing upon a finite time.
flan-package: Fluctuation analysis of mutant cell counts
luriadel: Resistant bacteria counts from Luria and Delbruck (1943)
rflan: The distribution of mutant cell counts
roster: Mutant counts from Rosche and Foster (2000)
See all...

All man pages Function index File listing

Man pages

boeal: Number of nalidixic acid-resistant mutants from Boe et al....
david: Mutant counts and final numbers from H. L. David (1970)
draw.clone: Graphic representation of clone growing upon a finite time.
flan-package: Fluctuation analysis of mutant cell counts
flan.test: Fluctuation Analysis parametric testing
luriadel: Resistant bacteria counts from Luria and Delbruck (1943)
mutestim: Fluctuation Analysis parametric estimation
rflan: The distribution of mutant cell counts
roster: Mutant counts from Rosche and Foster (2000)
werhoff: Rifampin-resistant mutant counts from Werngren and Hoffner...

Functions

FitnessGFEstimation Source code
FitnessP0Optimization Source code
MutationFitnessGFEstimation Source code
MutationFitnessMLOptimization Source code
MutationFitnessP0Estimation Source code
MutationGFEstimation Source code
MutationMLOptimization Source code
MutationP0Estimation Source code
MutationProbabilityFitnessMLOptimization Source code
MutationProbabilityMLOptimization Source code
MutationProbabilityP0MLOptimization Source code
MutationsNumberP0Estimation Source code
adjust.rate Source code
boeal Man page
david Man page
dclone Source code
dclone.dr Source code
deduce.dflan Source code
deduce.dflanda Source code
dflan Man page Source code
dflan.grad Source code
draw.clone Man page Source code
flan Man page
flan-package Man page
flan.test Man page Source code
flantest Source code
luriadel Man page
mutestim Man page Source code
onLoad Source code
pflan Man page Source code
print.flantest Source code
qflan Man page Source code
rdt Source code
rflan Man page Source code
roster Man page
werhoff Man page

Files

src
src/Makevars
src/rcpp_flan_module.cpp
src/FLAN_Clone.h
src/MATH_Function.h
src/MATH_Function.cpp
src/FLAN_Clone.cpp
src/FLAN_Sim.h
src/FLAN_MutationModel.h
src/Makevars.win
src/init.c
src/FLAN_MutationModel.cpp
src/FLAN_Sim.cpp
src/rcpp_flan_module.h
NAMESPACE
data
data/luriadel.RData
data/boeal.RData
data/werhoff.RData
data/roster.RData
data/datalist
data/david.RData
R
R/zzz.R
R/flan.R
MD5
README
DESCRIPTION
man
man/flan-package.Rd
man/roster.Rd
man/luriadel.Rd
man/david.Rd
man/werhoff.Rd
man/mutestim.Rd
man/rflan.Rd
man/flan.test.Rd
man/boeal.Rd
man/draw.clone.Rd
flan documentation built on May 23, 2017, 5:07 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.