Create a distance matrix between any number of locations
matrix of taxa (or equivalent data) in rows by columns of localities (or equivalent)
the distance/similarity index to compute
if the matrix is to be a distance ('dis') or similarity ('sim) matrix
This will create a distance (or similarity) matrix using any of the provided
chao.sorenson. Creating a
distance matrix will give a value of 1 for the most distantly related sites,
while similarity index will give a value of 1 for the most similar sites.
dino.dist is an old name for the function, and is in the process of being deprecated.
A distance matrix (lower triangle) giving the pairwise distance indices between all points.
To use a user generated distance index, type the name of the function to be used for method, and the function will use that function instead. Note that the function internally provides two equal length vectors at a time to the distance calculation function.
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