nmds.mst: Creating NMDS plots with overlain Minimum Spanning Trees
In fossil: Palaeoecological and Palaeogeographical Analysis Tools

Description Usage Arguments Details Value Author(s) See Also Examples

This is a helper function which will plot an NMDS with an overlain MST

1	nmds.mst(nmds, mst, ...)

`nmds`	an NMDS created using the ecodist program
`mst`	a minimum spanning tree or network (binary matrix)
`...`	arguments to be passed to the `plot` function

At the moment, the function requires an NMDS created using the ecodist program, howver the minimum spanning tree can be any one which creates a binary matrix showing connections (ie dino.mst).

Plots a non-metric multidimensional scaling plot with an overlain minimum spanning tree showing connections between the points.

Matthew Vavrek

dino.msn, dino.mst

## Not run: 
#use fdata.mat as dataset, and use the \code{ecodist} package for the \code{nmds()} function
data(fdata.mat)
z <- ecol.dist(fdata.mat)
a <- dino.msn(z)
b <- nmds(z)
nmds.mst(b, a)

## End(Not run)