subject.report.html: Create visual quality check report from QC result.

In fsbrain: Managing and Visualizing Brain Surface Data

Create visual quality check report from QC result.

Description

Create visual quality check report from QC result.

Usage

subject.report.html(
  subjects_dir,
  subjects_list,
  subjects_metadata = list(),
  out_dir = "fsbrain_qc_report",
  keep_existing_images = TRUE
)

Arguments

subjects_dir	string. The FreeSurfer SUBJECTS_DIR, i.e., a directory containing the data for all your subjects, each in a subdir named after the subject identifier.
subjects_list	string vector. A vector of subject identifiers that match the directory names within subjects_dir.
subjects_metadata	named list, keys can be subjects from subjects_list. Each key can hold another named list of strings, represeting arbitrary metadata for that subject that will be displayed in the report.
out_dir	character string, path to output dir. The last directory part will be created if it does not exist (but not recursively).
keep_existing_images	logical, whether to keep existing images. A lot faster on 2nd call.

fsbrain documentation built on July 9, 2023, 7:12 p.m.