Files in fsbrain
Managing and Visualizing Brain Surface Data
MD5
NAMESPACE
DESCRIPTION
LICENSE
R/renderable_transform.R
R/smooth.R
R/vis_multiview.R
R/metadata_io.R
R/vis.R
R/vis_group.R
R/vis_rglwidget.R
R/morph_concat.R
R/vis_dti_tracks.R
R/volume.R
R/atlas.R
R/cbar.R
R/brainview_magick.R
R/view_framing.R
R/spherical.R
R/vis_volume_clusters.R
R/geodesic.R
R/fsdir_abstraction_subject.R
R/coloredmesh.R
R/tracts_data.R
R/connectome.R
R/coloredpaths.R
R/vis_surface_background.R
R/sphere_cloud.R
R/seg_stats.R
R/cbar_magick.R
R/vis_meshes.R
R/hemilist.R
R/brain_igraph.R
R/export.R
R/optdata.R
R/vol2surf.R
R/morph_agg.R
R/vis_mesh_atlas.R
R/helpers_magick.R
R/fsdir_abstraction_group.R
R/tracts.R
R/scimesh_bridge.R
R/spatial.R
R/highlight.R
R/helpers.R
R/rglactions.R
R/vis_volume_3d.R
R/curvature.R
R/volvis_shells.R
R/morph_atlas_agg.R
R/vis_volume.R
inst/COPYRIGHTS
inst/CITATION
inst/doc/fsbrain_with_scimesh.R
inst/doc/fsbrain.Rmd
inst/doc/fsbrain_faq.R
inst/doc/fsbrain.html
inst/doc/fsbrain_faq.html
inst/doc/fsbrain.R
inst/doc/fsbrain_with_scimesh.html
inst/doc/fsbrain_with_scimesh.Rmd
inst/doc/fsbrain_vol.html
inst/doc/fsbrain_vol.R
inst/doc/fsbrain_vol.Rmd
inst/doc/fsbrain_faq.Rmd
inst/extdata/cube.ply
inst/extdata/demographics_nohdr.tsv
inst/extdata/rh.clusters_fsaverage.mgz
inst/extdata/demographics.tsv
inst/extdata/pkgfilecache_manifest_fs_LR_32_meshes.csv
inst/extdata/lh.thickness.gz
inst/extdata/pkgfilecache_manifest_fs_LR_32_labels.csv
inst/extdata/pkgfilecache_manifest_xtract_tracts.csv
inst/extdata/subjects.txt
inst/extdata/pkgfilecache_manifest_fsaverage_atlases.csv
inst/extdata/pkgfilecache_manifest_fs_LR_32_atlases.csv
inst/extdata/lh.clusters_fsaverage.mgz
inst/extdata/attribution/fsaverage/label/schaefer1000.attribution.json
inst/extdata/attribution/fsaverage/label/schaefer200.attribution.json
inst/extdata/attribution/fsaverage/label/HCPMMP1.attribution.json
inst/extdata/attribution/fsaverage/label/schaefer400.attribution.json
inst/extdata/attribution/fsaverage/label/schaefer100.attribution.json
inst/extdata/attribution/fsaverage/label/schaefer300.attribution.json
inst/extdata/attribution/fsaverage/label/brainnetome.attribution.json
inst/extdata/attribution/fsaverage/label/aal3.attribution.json
inst/extdata/attribution/fsaverage/surf/fsaverage.attribution.json
inst/extdata/attribution/fs_LR_32/label/schaefer1000.attribution.json
inst/extdata/attribution/fs_LR_32/label/schaefer200.attribution.json
inst/extdata/attribution/fs_LR_32/label/schaefer400.attribution.json
inst/extdata/attribution/fs_LR_32/label/schaefer100.attribution.json
inst/extdata/attribution/fs_LR_32/label/schaefer300.attribution.json
inst/extdata/attribution/fs_LR_32/label/brainnetome.attribution.json
inst/extdata/attribution/fs_LR_32/label/aal3.attribution.json
inst/extdata/attribution/fs_LR_32/surf/fs_LR_32k.attribution.json
build/vignette.rds
build/partial.rdb
tests/testthat_vz.R
tests/testthat_au.R
tests/testthat/test-connectome.R
tests/testthat/test-brainview_magic.R
tests/testthat/test-morph_atlas_agg.R
tests/testthat/test-r_vis_volume.R
tests/testthat/test-mesh_helpers.R
tests/testthat/test-fsdir_abstraction_group.R
tests/testthat/test-smooth.R
tests/testthat/test-issue50.R
tests/testthat/test-vis_mesh_atlas.R
tests/testthat/test-export.R
tests/testthat/test-vis-volume-on-surface.R
tests/testthat/test-curvature.R
tests/testthat/teardown-cran.R
tests/testthat/test-morph_agg.R
tests/testthat/test-highlight.R
tests/testthat/test-tracts.R
tests/testthat/test-alphablend.R
tests/testthat/test-vol2surf.R
tests/testthat/test-y_vis_multiview.R
tests/testthat/test-scimesh_bridge.R
tests/testthat/test-coloredmesh.R
tests/testthat/test-seg_stats.R
tests/testthat/test-brain_igraph.R
tests/testthat/test-u_find_subjectsdir.R
tests/testthat/test-x_vis_meshes.R
tests/testthat/test-vis.R
tests/testthat/test-camera_unification.R
tests/testthat/test-w_vis_group.R
tests/testthat/test-z_vis_surface_background.R
tests/testthat/test-u_vis_volume_clusters.R
tests/testthat/test-rglactions.R
tests/testthat/test-helpers.R
tests/testthat/test-morph_concat.R
tests/testthat/test-spherical.R
tests/testthat/test-u_vis_volume_3d.R
tests/testthat/test-u_volvis_shells.R
tests/testthat/fsbrain_issue50_export.png
tests/testthat/setup-cran.R
tests/testthat/helper-functions.R
tests/testthat/test-fsdir_abstraction_subject.R
tests/testthat/test-spatial.R
tests/testthat/test-metadata_io.R
tests/testthat/test-geodesic.R
tests/testthat/test-atlas.R
tests/testthat/test-cbar.R
tests/testthat/test-helper_magick.R
tests/testthat/test-volume.R
tests/testthat/test-r_vis_volume_scale.R
tests/testthat/test-coloredpaths.R
vignettes/fsbrain.Rmd
vignettes/fsbrain_aseg_background.jpg
vignettes/fsbrain_lb_background.jpg
vignettes/fsbrain_lightbox.jpg
vignettes/fsbrain_vis_bg.jpg
vignettes/fsbrain_with_scimesh.Rmd
vignettes/fsbrain_vis_views.jpg
vignettes/fsbrain_vol.Rmd
vignettes/colorbar_separate.jpg
vignettes/fsbrain_ct.jpg
vignettes/fsbrain_vis_surfaces.jpg
vignettes/fsbrain_aparc.jpg
vignettes/colorbar_bgplot3d.jpg
vignettes/fsbrain_lb.jpg
vignettes/fsbrain_faq.Rmd
man/vis.data.on.fsaverage.Rd
man/resolve.template.subjects.dir.Rd
man/download_optional_data.Rd
man/rglactions.transform.Rd
man/group.morph.agg.standard.vertex.Rd
man/can.plot.colorbar.Rd
man/write.group.morph.standard.singlehemi.Rd
man/coloredmesh.from.spheres.Rd
man/subject.report.html.Rd
man/face.edges.Rd
man/coloredmesh.from.morph.native.Rd
man/arrange.brainview.images.grid.Rd
man/vol.merge.Rd
man/shell.palette.Rd
man/surface.curvatures.Rd
man/group.annot.Rd
man/subject.label.Rd
man/print.fsbrain.Rd
man/get.fsbrain.scimesh.aa.samples.Rd
man/shell.levels.Rd
man/rgl.coord.lines.Rd
man/vis.symmetric.data.on.subject.Rd
man/is.fs.coloredvoxels.Rd
man/coloredmesh.from.morphdata.Rd
man/track.length.Rd
man/surf.radius.fsaverage.Rd
man/colors.have.transparency.Rd
man/context.mesh.resolve.subjects.dir.Rd
man/volume.boxblur.Rd
man/write.region.aggregated.Rd
man/check.subjectslist.Rd
man/print.fs.coloredmesh.Rd
man/cube3D.tris.Rd
man/normalize.Rd
man/deepcopylist.long.Rd
man/fsbrain.renderable.Rd
man/coloredmeshes_to_scimesh.Rd
man/collayer.bg.sulc.Rd
man/download_fsaverage_minimal.Rd
man/extend_neighbors.Rd
man/fs.coloredpaths.Rd
man/combine.colorbar.with.brainview.animation.Rd
man/geod.patches.color.overlay.Rd
man/vol.read.file.with.affine.Rd
man/hex_colors_to_rgba_matrix.Rd
man/read.md.demographics.Rd
man/vol.vox.from.crs.Rd
man/mkco.seq.Rd
man/force.to.range.Rd
man/extract.volume.3D.Rd
man/group.morph.agg.native.Rd
man/vol.sample.trilinear.Rd
man/rglo.Rd
man/images.rescale.to.max.canvas.Rd
man/label.from.annotdata.Rd
man/fslong.subjects.finished.Rd
man/draw.colorbar.Rd
man/volvis.slices.with.surface.Rd
man/collayer.from.annot.Rd
man/renderables_to_line_layers.Rd
man/get.rglstyle.edges.Rd
man/images.dimmax.Rd
man/coloredpaths.length.Rd
man/apply.transform.Rd
man/vol.warn.outside.Rd
man/group.label.from.annot.Rd
man/vis.group.coloredmeshes.Rd
man/images.annotate.Rd
man/apply.style.alpha.Rd
man/geod.patches.color.overlay.singlehemi.Rd
man/group.surface.Rd
man/get.rglstyle.semitransparent.Rd
man/cluster.shell.alpha.Rd
man/label.border.Rd
man/collayer.bg.atlas.Rd
man/cm.qual.Rd
man/surfs.props.Rd
man/spread.values.over.subject.Rd
man/vis.connectome.Rd
man/coloredmesh.from.color.Rd
man/test.numerical.meandiff.unpaired.Rd
man/subject.filepath.morph.native.Rd
man/vis.rglwidget.Rd
man/mergehemi.annots.Rd
man/ensure.tmesh3d.Rd
man/template.vol2surf.Rd
man/hemilist.unwrap.Rd
man/write.group.morph.standard.Rd
man/mesh.atlas.context.layer.Rd
man/magick.grid.Rd
man/vol.intensity.to.color.Rd
man/desaturate.Rd
man/images.same.height.Rd
man/vis.group.morph.native.Rd
man/recycle.Rd
man/vis.dti.trk.Rd
man/segment_bbox.Rd
man/vol.check.interpolation.Rd
man/groupmorph.split.hemilist.Rd
man/download_optional_paper_data.Rd
man/is.fs.coloredmesh.Rd
man/collayer.from.mask.data.Rd
man/get.rglstyle.glass2.Rd
man/draw.segments.on.image.Rd
man/label.to.annot.Rd
man/subject.filepath.any.Rd
man/streamlines.to.tracts.Rd
man/mesh.atlas.check.files.Rd
man/spread.values.over.annot.Rd
man/vox2ras_tkr.Rd
man/shell.coloredmeshes.Rd
man/is.fs.coloredpaths.Rd
man/limit_fun.Rd
man/numverts.lh.Rd
man/cubes3D.tris.Rd
man/download_xtract_tracts.Rd
man/group.agg.atlas.standard.Rd
man/subject.label.from.annot.Rd
man/apply.transform.matrix.Rd
man/unit.icosphere.Rd
man/get.atlas.region.names.Rd
man/read.colorcsv.Rd
man/apply.affine.to.coords.Rd
man/group.multimorph.agg.standard.Rd
man/coloredmesh.plot.colorbar.separate.Rd
man/geod.patches.pervertexdata.Rd
man/colors.are.grayscale.Rd
man/flc.Rd
man/group.data.to.array.Rd
man/volvis.voxels.Rd
man/coloredmeshes.from.color.Rd
man/mkco.div.Rd
man/group.morph.agg.standard.Rd
man/vis.subject.morph.native.Rd
man/vis.view.Rd
man/vis.subject.pre.Rd
man/vol.frac.vertices.Rd
man/export.Rd
man/fslong.subjects.detect.Rd
man/translation.matrix.Rd
man/download_fs_LR_32_atlases.Rd
man/qc.from.regionwise.df.Rd
man/qdec.table.filter.Rd
man/perform.na.mapping.Rd
man/label.border.fast.Rd
man/cm.cbry.Rd
man/path.colors.from.orientation.Rd
man/qc.report.html.Rd
man/get.rglstyle.glass.Rd
man/coloredmesh.from.preloaded.data.Rd
man/get.fsbrain.renderer.backend.Rd
man/vis.coloredmeshes.rotating.Rd
man/subject.morph.standard.Rd
man/vol.sample.nearest.Rd
man/regions.to.ignore.Rd
man/highlight.vertices.on.subject.spheres.Rd
man/volume.subsample.matrix.Rd
man/surf.sphere.spatialfilter.Rd
man/hemlist.ensure.contains.Rd
man/vis.rotated.coloredmeshes.Rd
man/find.freesurferhome.Rd
man/shell.cut.away.Rd
man/fs.surface.as.adjacencylist.Rd
man/coloredmesh.from.annot.Rd
man/write.region.values.Rd
man/vis.fs.surface.Rd
man/qdec.table.skeleton.Rd
man/vertex.hemis.Rd
man/shape.descriptors.Rd
man/bounding_sphere.Rd
man/mask.from.labeldata.for.hemi.Rd
man/report.on.demographics.Rd
man/list_optional_data.Rd
man/cm.heat.Rd
man/vis.subject.label.Rd
man/qc.from.segstats.tables.Rd
man/can.plot.colorbar.from.coloredmeshes.Rd
man/images.same.width.Rd
man/download_fs_LR_32_meshes.Rd
man/vol.boundary.box.Rd
man/rad2deg.Rd
man/geod.patches.pervertexdata.singlehemi.Rd
man/delete_all_optional_data.Rd
man/scale01.Rd
man/geodesic.path.Rd
man/surf.sphere.gaussianweights.Rd
man/vis.coloredpaths.Rd
man/vis.mask.on.subject.Rd
man/get.slice.indices.Rd
man/vol.overlay.colors.from.activation.Rd
man/surface.interpolate.frac.Rd
man/volume.cluster.levels.Rd
man/qc.for.group.Rd
man/vis.coloredmesh.Rd
man/hemilist.Rd
man/getIn.Rd
man/demographics.to.qdec.table.dat.Rd
man/subject.region.centroids.Rd
man/vol.load.Rd
man/mesh.atlas.file.paths.Rd
man/shape.descriptor.names.Rd
man/vis.paths.Rd
man/qc.vis.failcount.by.region.Rd
man/arrange.brainview.images.Rd
man/as.tract.bundle.list.Rd
man/check.segment.points.Rd
man/volvis.shells.Rd
man/fs.coloredmesh.Rd
man/hex_to_rgba.Rd
man/vis.renderable.Rd
man/check.transform.matrix.Rd
man/subject.atlas.agg.Rd
man/coloredmeshes.combined.data.range.Rd
man/vdata.split.by.hemi.Rd
man/cm.div.Rd
man/geodesic.ballstats.Rd
man/shell.backend.Rd
man/fs.surface.vertex.neighbors.Rd
man/volvis.contour.Rd
man/collayer.bg.Rd
man/rotation.matrix.for.axis.rot.Rd
man/fs.value.list.from.agg.res.Rd
man/volume.boxblur.axis.Rd
man/get.rglstyle.Rd
man/hasIn.Rd
man/filter_scene_by_view.Rd
man/subject.surface.Rd
man/vis.volume.on.surface.Rd
man/fup.Rd
man/get.view.angle.names.Rd
man/vis.colortable.legend.Rd
man/vol.mask.from.segmentation.Rd
man/submesh.vertex.Rd
man/hemi.lobe.labels.Rd
man/highlight.vertices.spheres.Rd
man/coloredmesh_to_scimesh.Rd
man/sjd.demo.Rd
man/hemilist.from.prefixed.list.Rd
man/get.subject.class.Rd
man/vis.coloredmeshes.Rd
man/deg2rad.Rd
man/vis.export.from.coloredmeshes.Rd
man/volume.cluster.threshold.Rd
man/pervertexdata.smoothnn.compute.numiter.Rd
man/group.agg.atlas.native.Rd
man/read.tract.bundles.Rd
man/mesh.slice.intersection.Rd
man/highlight_points_to_scimesh.Rd
man/test.numerical.meandiff.paired.Rd
man/is.hemilist.Rd
man/fs.surface.to.igraph.Rd
man/rotation.matrix.Rd
man/alphablend.Rd
man/subject.num.verts.Rd
man/check.subjects.files.Rd
man/shell.volume.data.Rd
man/values.to.range.Rd
man/vol.sample.at.coords.Rd
man/group.morph.native.Rd
man/symmrange.Rd
man/vis.data.on.subject.Rd
man/mesh.vertex.included.faces.Rd
man/highlight.vertices.on.subject.Rd
man/collayer.from.morphlike.data.Rd
man/sortcoloredmeshes.by.hemi.Rd
man/surf.sphere.dist.Rd
man/vis.group.annot.Rd
man/spheres.mesh.Rd
man/vis.path.along.verts.Rd
man/read.md.subjects.Rd
man/vol.check.surface.frac.Rd
man/fsaverage.path.Rd
man/vis.subject.annot.Rd
man/color_to_rgba.Rd
man/write.region.values.fsaverage.Rd
man/apply.labeldata.to.morphdata.Rd
man/colorlist.brain.clusters.Rd
man/mesh.ras2crs.Rd
man/hull.retain.along.axis.Rd
man/vis.subcortical.region.values.Rd
man/principal.curvatures.Rd
man/group.multimorph.agg.native.Rd
man/subject.mask.Rd
man/get_optional_data_filepath.Rd
man/group.morph.standard.Rd
man/mesh.atlas.all.regions.hidden.Rd
man/demo.Rd
man/download_fsaverage6.Rd
man/volvis.lightbox.Rd
man/numverts.rh.Rd
man/vol.boundary.box.apply.Rd
man/geodesic.dists.to.vertex.Rd
man/connectivity.matrix.from.edge.list.Rd
man/safe.image.trim.Rd
man/rglactions.has.key.Rd
man/surf.avg.vertexradius.Rd
man/vol.tkreg.affine.Rd
man/demographics.to.fsgd.file.Rd
man/combine.colorbar.with.brainview.image.Rd
man/shell.extract.mesh.Rd
man/vis.paths.along.verts.Rd
man/geod.vert.neighborhood.Rd
man/coloredmesh.from.mask.Rd
man/is.Triangles3D.Rd
man/hemilist.derive.hemi.Rd
man/fsbrain_style_to_scimesh_options.Rd
man/ras2vox_tkr.Rd
man/vol.planes.Rd
man/download_fs_LR_32_labels.Rd
man/export.coloredmesh.ply.Rd
man/subdivide.triangles.Rd
man/write.group.morph.standard.sf.Rd
man/rglot.Rd
man/shift.hemis.apart.Rd
man/compute.surface.contour.slices.Rd
man/Triangles3D.to.coloredmesh.Rd
man/subject.annot.Rd
man/vis.seg.legend.Rd
man/eeg_coords.Rd
man/download_fsaverage3.Rd
man/group.label.Rd
man/vol.boundary.mask.Rd
man/view_label3d.Rd
man/print.fs.coloredvoxels.Rd
man/vis.tracts.Rd
man/tract.bundle.name.from.file.Rd
man/group.start.rows.Rd
man/volume.subsample.Rd
man/gen.test.volume.Rd
man/perform.rglactions.Rd
man/get.rglstyle.shiny.Rd
man/hemilist.wrap.Rd
man/hemilist.get.combined.data.Rd
man/volume.clusters.colormap.Rd
man/ensure.fs.surface.Rd
man/subject.annot.border.Rd
man/labeldata.from.mask.Rd
man/write.group.morph.standard.mf.Rd
man/rglvoxels.Rd
man/vis.data.on.group.standard.Rd
man/qc.from.segstats.table.Rd
man/download_fsaverage_atlases.Rd
man/get.fsbrain.scimesh.output.dims.Rd
man/clip_fun.Rd
man/collayer.bg.meancurv.Rd
man/read.md.subjects.from.fsgd.Rd
man/vis.group.morph.standard.Rd
man/mesh.atlas.hide.nan.vertices.Rd
man/tmesh3d.to.fs.surface.Rd
man/collayer.from.annotdata.Rd
man/vis.data.on.group.native.Rd
man/FSBRAIN_SCIMESH_DEFAULT_AA.Rd
man/vis.volume.clusters.Rd
man/vol.apply.cortex.mask.Rd
man/sph2fs.Rd
man/vis.labeldata.on.subject.Rd
man/wrapped.image.append.Rd
man/index2ras_tkr.Rd
man/apply.label.to.morphdata.Rd
man/group.morph.standard.sf.Rd
man/vis.subject.morph.standard.Rd
man/highlight.points.spheres.Rd
man/subject.vol2surf.Rd
man/agg.res.long.to.wide.Rd
man/surf.center.fsaverage.Rd
man/surf.metric.properties.Rd
man/label.colFn.Rd
man/volvis.lb.Rd
man/brainview.si.Rd
man/list.tract.bundle.files.Rd
man/mkco.cluster.Rd
man/coloredmesh.from.morph.standard.Rd
man/vol.overlay.colors.from.colortable.Rd
man/values.to.colorlayer.Rd
man/volvis.lb.with.surface.Rd
man/coloredmesh.from.label.Rd
man/group.concat.measures.standard.Rd
man/pervertexdata.smoothgaussian.Rd
man/segment.orientation.colors.Rd
man/geodesic.circles.Rd
man/constant.pervertexdata.Rd
man/subject.filepath.morph.standard.Rd
man/match.bundle.values.Rd
man/mesh.atlas.restrict.faces.Rd
man/subject.morph.native.Rd
man/spread.values.over.hemi.Rd
man/vol.find.file.Rd
man/view_angle_to_scimesh_camera.Rd
man/boxcoords.from.bbox.Rd
man/brainview.sr.Rd
man/geodesic.average.distance.Rd
man/brainviews.Rd
man/mkco.heat.Rd
man/vol.imagestack.Rd
man/combine.colorbar.with.brainview.image.vertical.Rd
man/vol.slice.Rd
man/combine_bboxes.Rd
man/qc.fslong.checkidenticaldata.Rd
man/pervertexdata.smoothnn.Rd
man/coloredmeshes.get.md.Rd
man/fs.home.Rd
man/limit_fun_na.Rd
man/vislayout.from.coloredmeshes.Rd
man/apply.transform.to.tracts.Rd
man/brainview.t9.Rd
man/brain.Rd
man/shift.hemis.rglactions.Rd
man/vol.vol2surf.hemilist.Rd
man/common.makecmap.range.Rd
man/limit_fun_na_inside.Rd
man/brainview.sd.Rd
man/find.subjectsdir.of.Rd
man/print.fs.coloredpaths.Rd
man/sjld.Rd
man/mesh.atlas.resolve.subjects.dir.Rd
man/subject.volume.Rd
man/brainview.t4.Rd
man/vol.plane.axes.Rd
man/take.screenshot.Rd
man/subject.dir.has.core.files.Rd
man/group.concat.measures.native.Rd
man/fsbrain.set.default.figsize.Rd
man/get.rglstyle.default.Rd
man/fs.surface.to.tmesh3d.Rd
man/vis.color.on.subject.Rd
man/vol.hull.Rd
man/vertex.coords.Rd
man/subject.lobes.Rd
man/pp.named.list.Rd
man/path.slopes.Rd
man/cm.seq.Rd
man/mesh.vertex.neighbors.Rd
man/annot.outline.border.vertices.Rd
man/vol.select.frame.Rd
man/rglactions.Rd
man/mesh.weld.Rd
man/view.angle.to.hemi.filter.Rd
man/per.hemi.vertex.indices.Rd
man/clip.data.Rd
man/volume.cluster.extremes.Rd
man/handle.rglactions.highlight.points.Rd
man/streamlines.to.segments.Rd
man/download_fsaverage.Rd
man/normalize.region.names.Rd
man/vis.region.values.on.subject.Rd
man/label.colFn.inv.Rd
man/subject.descriptor.geodesic.average.distance.Rd
man/is.fsbrain.Rd
man/coloredpaths_to_scimesh.Rd
man/get.rglstyle.parameters.Rd
man/pervertexdata.smoothnn.compute.fwhm.Rd
man/collayers.merge.Rd
man/annot.outline.Rd
man/test.numerical.meandiff.Rd
