API for fsbrain
Managing and Visualizing Brain Surface Data

Global functions
alphablend Man page Source code
annot.outline Man page Source code
apply.label.to.morphdata Man page Source code
apply.labeldata.to.morphdata Man page Source code
apply.transform Man page Source code
arrange.brainview.images Man page Source code
arrange.brainview.images.grid Man page Source code
boxcoords.from.bbox Man page Source code
brainview.sd Man page Source code
brainview.si Man page Source code
brainview.sr Man page Source code
brainview.t4 Man page Source code
brainview.t9 Man page Source code
brainviews Man page Source code
can.plot.colorbar Man page
can.plot.colorbar.from.coloredmeshes Man page
check.subjectslist Man page Source code
clip.data Man page Source code
cm.cbry Man page
cm.div Man page
cm.heat Man page
cm.qual Man page
cm.seq Man page
collayer.bg Man page Source code
collayer.bg.atlas Man page Source code
collayer.bg.meancurv Man page Source code
collayer.bg.sulc Man page Source code
collayer.from.annot Man page Source code
collayer.from.annotdata Man page Source code
collayer.from.mask.data Man page Source code
collayer.from.morphlike.data Man page Source code
collayers.merge Man page Source code
coloredmesh.from.annot Man page Source code
coloredmesh.from.color Man page Source code
coloredmesh.from.label Man page Source code
coloredmesh.from.mask Man page Source code
coloredmesh.from.morph.native Man page Source code
coloredmesh.from.morph.standard Man page Source code
coloredmesh.from.morphdata Man page Source code
coloredmesh.from.preloaded.data Man page Source code
coloredmesh.plot.colorbar.separate Man page Source code
coloredmeshes.combined.data.range Man page Source code
coloredmeshes.from.color Man page Source code
coloredmeshes.get.md Man page Source code
colorlist.brain.clusters Man page Source code
combine.colorbar.with.brainview.animation Man page Source code
combine.colorbar.with.brainview.image Man page Source code
combine.colorbar.with.brainview.image.vertical Man page Source code
common.makecmap.range Man page Source code
cube3D.tris Man page Source code
cubes3D.tris Man page Source code
deg2rad Man page Source code
delete_all_optional_data Man page Source code
demographics.to.fsgd.file Man page Source code
desaturate Man page Source code
download_fsaverage Man page Source code
download_fsaverage3 Man page Source code
download_optional_data Man page Source code
download_optional_paper_data Man page Source code
draw.colorbar Man page Source code
eeg_coords Man page Source code
export.coloredmesh.ply Man page Source code
face.edges Man page Source code
find.freesurferhome Man page
find.subjectsdir.of Man page
flc Man page Source code
force.to.range Man page Source code
fs.coloredmesh Man page Source code
fs.home Man page
fs.value.list.from.agg.res Man page Source code
fsaverage.path Man page
fsbrain.renderable Man page Source code
fsbrain.set.default.figsize Man page
fup Man page Source code
gen.test.volume Man page
get.atlas.region.names Man page Source code
get.rglstyle Man page Source code
get.rglstyle.default Man page Source code
get.rglstyle.edges Man page Source code
get.rglstyle.parameters Man page Source code
get.rglstyle.semitransparent Man page Source code
get.rglstyle.shiny Man page Source code
get.slice.indices Man page Source code
get.sorted.cmeshes Source code
get.subject.class Man page Source code
get.view.angle.names Man page Source code
getIn Man page
get_optional_data_filepath Man page Source code
gm.absolute_intrinsic_curvature_index Source code
gm.absolute_mean_curvature_index Source code
gm.area_fraction_of_intrinsic_curvature_index Source code
gm.area_fraction_of_mean_curvature_index Source code
gm.area_fraction_of_negative_intrinsic_curvature_index Source code
gm.area_fraction_of_negative_mean_curvature_index Source code
gm.curvedness_index Source code
gm.folding_index Source code
gm.gaussian_curvature Source code
gm.gaussian_l2_norm Source code
gm.intrinsic_curvature_index Source code
gm.mean_curvature Source code
gm.mean_curvature_index Source code
gm.mean_l2_norm Source code
gm.negative_intrinsic_curvature_index Source code
gm.negative_mean_curvature_index Source code
gm.sh2sh Source code
gm.shape_index Source code
gm.shape_type Source code
gm.sk2sk Source code
group.agg.atlas.native Man page Source code
group.agg.atlas.standard Man page Source code
group.annot Man page Source code
group.concat.measures.native Man page Source code
group.concat.measures.standard Man page Source code
group.data.to.array Man page Source code
group.label Man page Source code
group.label.from.annot Man page Source code
group.morph.agg.native Man page Source code
group.morph.agg.standard Man page Source code
group.morph.agg.standard.vertex Man page Source code
group.morph.native Man page Source code
group.morph.standard Man page Source code
group.morph.standard.sf Man page Source code
group.multimorph.agg.native Man page Source code
group.multimorph.agg.standard Man page Source code
group.surface Man page Source code
hasIn Man page
hemi.lobe.labels Man page Source code
hemilist.derive.hemi Man page Source code
hemilist.get.combined.data Man page Source code
hemilist.unwrap Man page Source code
hemilist.wrap Man page Source code
highlight.vertices.on.subject Man page Source code
hull.retain.along.axis Man page Source code
image.remap.color Man page Source code
images.annotate Man page Source code
images.dimmax Man page Source code
images.rescale.to.max.canvas Man page Source code
images.same.height Man page Source code
images.same.width Man page Source code
is.Triangles3D Man page Source code
is.fs.coloredmesh Man page Source code
is.fs.coloredvoxels Man page Source code
is.hemilist Man page Source code
label.border Man page Source code
label.colFn Man page Source code
label.colFn.inv Man page Source code
label.from.annotdata Man page Source code
label.to.annot Man page Source code
labeldata.from.mask Man page Source code
limit_fun Man page Source code
limit_fun_na Man page Source code
limit_fun_na_inside Man page Source code
list_optional_data Man page Source code
magick.grid Man page Source code
makecmakeopts.merge Man page
mask.from.labeldata.for.hemi Man page Source code
merge.hemi.annots Man page Source code
mesh.vertex.included.faces Man page Source code
mesh.vertex.neighbors Man page Source code
mkco.cluster Man page
mkco.div Man page
mkco.heat Man page
mkco.seq Man page
normalize Man page Source code
path.colors.from.orientation Man page Source code
path.slopes Man page Source code
perform.na.mapping Man page Source code
perform.rglactions Man page Source code
plot.fsbrain.colorbar Man page
pp.named.list Man page Source code
principal.curvatures Man page Source code
print.fs.coloredmesh Man page Source code
print.fs.coloredvoxels Man page Source code
qc.for.group Man page Source code
qc.from.regionwise.df Man page Source code
qc.from.segstats.table Man page Source code
qc.from.segstats.tables Man page Source code
qc.vis.failcount.by.region Man page Source code
rad2deg Man page Source code
ras2vox_tkr Man page Source code
read.colorcsv Man page
read.md.demographics Man page Source code
read.md.subjects Man page Source code
read.md.subjects.from.fsgd Man page Source code
recycle Man page Source code
regions.to.ignore Man page Source code
report.on.demographics Man page Source code
rgl.coord.lines Man page Source code
rglactions Man page Source code
rglactions.has.key Man page Source code
rglactions.transform Man page Source code
rglo Man page
rglot Man page
rglvoxels Man page Source code
scale.to.range.zero.one Man page Source code
shape.descriptor.names Man page Source code
shape.descriptors Man page Source code
shift.hemis.apart Man page Source code
shift.hemis.rglactions Man page Source code
sort.coloredmeshes.by.hemi Man page Source code
sph2fs Man page Source code
spread.values.over.annot Man page Source code
spread.values.over.hemi Man page Source code
spread.values.over.subject Man page Source code
subject.annot Man page Source code
subject.atlas.agg Man page Source code
subject.filepath.any Man page Source code
subject.filepath.morph.native Man page Source code
subject.filepath.morph.standard Man page Source code
subject.label Man page Source code
subject.label.from.annot Man page Source code
subject.lobes Man page Source code
subject.mask Man page Source code
subject.morph.native Man page Source code
subject.morph.standard Man page Source code
subject.num.verts Man page Source code
subject.surface Man page Source code
subject.volume Man page Source code
surf.center.fsaverage Man page Source code
surf.radius.fsaverage Man page Source code
surfs.props Man page Source code
symmrange Man page
test.numerical.meandiff Man page Source code
test.numerical.meandiff.paired Man page Source code
test.numerical.meandiff.unpaired Man page Source code
track.length Man page Source code
vdata.split.by.hemi Man page
vis.color.on.subject Man page Source code
vis.coloredmesh Man page Source code
vis.coloredmeshes Man page Source code
vis.coloredmeshes.rotating Man page Source code
vis.colortable.legend Man page Source code
vis.data.on.fsaverage Man page Source code
vis.data.on.group.native Man page Source code
vis.data.on.group.standard Man page Source code
vis.data.on.subject Man page Source code
vis.dti.trk Man page Source code
vis.export.from.coloredmeshes Man page Source code
vis.fs.surface Man page Source code
vis.group.annot Man page Source code
vis.group.coloredmeshes Man page Source code
vis.group.morph.native Man page Source code
vis.group.morph.standard Man page Source code
vis.labeldata.on.subject Man page Source code
vis.mask.on.subject Man page Source code
vis.path.along.verts Man page Source code
vis.paths Man page Source code
vis.region.values.on.subject Man page Source code
vis.renderable Man page Source code
vis.rotated.coloredmeshes Man page Source code
vis.subject.annot Man page Source code
vis.subject.label Man page Source code
vis.subject.morph.native Man page Source code
vis.subject.morph.standard Man page Source code
vis.symmetric.data.on.subject Man page Source code
vislayout.from.coloredmeshes Man page Source code
vol.boundary.box Man page Source code
vol.boundary.box.apply Man page Source code
vol.boundary.mask Man page Source code
vol.hull Man page Source code
vol.imagestack Man page Source code
vol.intensity.to.color Man page Source code
vol.mask.from.segmentation Man page Source code
vol.merge Man page Source code
vol.overlay.colors.from.activation Man page Source code
vol.overlay.colors.from.colortable Man page Source code
vol.plane.axes Man page Source code
vol.planes Man page Source code
vol.slice Man page Source code
vol.vox.from.crs Man page Source code
volvis.contour Man page Source code
volvis.lightbox Man page Source code
volvis.voxels Man page Source code
vox2ras_tkr Man page Source code
wrapped.image.append Man page Source code
write.group.morph.standard.sf Man page Source code
write.region.aggregated Man page Source code
write.region.values Man page Source code
write.region.values.fsaverage Man page Source code
fsbrain documentation built on May 12, 2021, 5:06 p.m.