Description Usage Format References Examples

This is a data set of copy number variation data with *n=500* observations and *p=1000* features. The length *n* `batch`

vector (first column of `caseDat`

) indicates the batch for each sample.

1 |

A list with two objects:

`batch`

A numeric vector indicating batch for the

*n=500*samples.`data`

A matrix of

*n=500*samples and*p=1000*features.

Reese, S. E., Archer, K. J., Therneau, T. M., Atkinson, E. J., Vachon, C. M., de Andrade, M., Kocher, J. A., and Eckel-Passow, J. E. A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal components analysis. Bioinformatics, (in review).

1 |

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gPCA documentation built on May 30, 2017, 8:16 a.m.

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