gDist: Density/Distribution Plot for gPCA

Description Usage Arguments Author(s) References See Also Examples

View source: R/gDist.R

Description

This function produces a density plot of the permutation δ_p values.

Usage

1
gDist(out)

Arguments

out

object resulting from gPCA.batchdetect() call.

Author(s)

Sarah Reese [email protected]

References

Reese, S. E., Archer, K. J., Therneau, T. M., Atkinson, E. J., Vachon, C. M., de Andrade, M., Kocher, J. A., and Eckel-Passow, J. E. A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal components analysis. Bioinformatics, (in review).

See Also

gPCA.batchdetect,PCplot,CumulativeVarPlot

Examples

1
# gDist(out)

Example output



gPCA documentation built on May 30, 2017, 8:16 a.m.