This package implements guided principal components analysis for the detection of batch effects in high-throughput data.
gPCA.batchdetect() is used to perform the batch detection test and outputs the
resulting δ statistic and corresponding p-value, along with other useful measures for visualization.
Maintainer: Sarah Reese [email protected]
Reese, S. E., Archer, K. J., Therneau, T. M., Atkinson, E. J., Vachon, C. M., de Andrade, M., Kocher, J. A., and Eckel-Passow, J. E. A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal components analysis. Bioinformatics, (in review).
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