gPCA-package: Batch Effect Detection via Guided Principal Components...
In gPCA: Batch Effect Detection via Guided Principal Components Analysis
Description
Details
Author(s)
References
See Also
Description
This package implements guided principal components analysis for the detection of batch effects in high-throughput data.
Details
Package: gPCA
Type: Package
Version: 1.0
Date: 2013-07-25
License: GPL (>=2)
The function gPCA.batchdetect() is used to perform the batch detection test and outputs the
resulting δ statistic and corresponding p-value, along with other useful measures for visualization.
Author(s)
Sarah Reese
Maintainer: Sarah Reese reesese@vcu.edu
References
Reese, S. E., Archer, K. J., Therneau, T. M., Atkinson, E. J., Vachon, C. M., de Andrade, M., Kocher, J. A., and Eckel-Passow, J. E. A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal components analysis. Bioinformatics, (in review).
See Also
gPCA documentation built on May 2, 2019, 4:02 p.m.
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Description Details Author(s) References See Also
Description
This package implements guided principal components analysis for the detection of batch effects in high-throughput data.
Details
| Package: | gPCA |
| Type: | Package |
| Version: | 1.0 |
| Date: | 2013-07-25 |
| License: | GPL (>=2) |
The function gPCA.batchdetect() is used to perform the batch detection test and outputs the
resulting δ statistic and corresponding p-value, along with other useful measures for visualization.
Author(s)
Sarah Reese
Maintainer: Sarah Reese reesese@vcu.edu
References
Reese, S. E., Archer, K. J., Therneau, T. M., Atkinson, E. J., Vachon, C. M., de Andrade, M., Kocher, J. A., and Eckel-Passow, J. E. A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal components analysis. Bioinformatics, (in review).
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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