Nothing
test_that("atlas_taxonomy 'identify' must be specified", {
expect_error({
galah_call() |>
filter(rank == "kingdom") |>
atlas_taxonomy()
})
})
test_that("atlas_taxonomy 'filter' must be specified", {
expect_error({
galah_call() |>
identify("Animalia") |>
atlas_taxonomy()
})
})
test_that("atlas_taxonomy requires a single taxon", {
expect_error({
galah_call() |>
identify("Animalia", "Plantae") |>
filter(rank == "Phylum") |>
atlas_taxonomy()
})
})
test_that("atlas_taxonomy makes a tree when piped", {
skip_if_offline()
tree <- galah_call() |>
identify("fungi") |>
filter(rank >= phylum) |>
atlas_taxonomy()
expect_s3_class(tree, c("tbl_df", "tbl", "data.frame"))
expect_equal(ncol(tree), 4)
expect_gte(nrow(tree), 1)
})
test_that("atlas_taxonomy example runs", {
skip_if_offline()
df <- galah_call() |>
galah_identify("chordata") |>
galah_filter(rank == class) |>
atlas_taxonomy()
expect_s3_class(df, c("tbl_df", "tbl", "data.frame"))
expect_equal(ncol(df), 4)
expect_gte(nrow(df), 1)
})
# FIXME: add test for non-piped usage of `atlas_taxonomy()`
# FIXME: add test for constrain_ids
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