Nothing
# Warning generated by `galah_identify()` about empty query
test_that("galah_identify returns an empty tibble when no args provided", {
expect_warning({result <- galah_identify()})
expect_equal(nrow(result), 0)
expect_warning(galah_identify(), "No query passed")
})
test_that("galah_identify runs a search when given a string", {
result <- galah_identify("Litoria peronii")
expect_equal(nrow(result), 1)
})
test_that("galah_identify runs a search on multiple strings", {
result <- galah_identify("amphibia", "reptilia", "aves", "mammalia")
expect_equal(nrow(result), 4)
})
test_that("galah_identify runs a search on multiple strings wrapped by c()", {
search_terms <- c("amphibia", "reptilia", "aves", "mammalia")
result <- galah_identify(search_terms)
expect_equal(nrow(result), 4)
})
test_that("galah_identify pipes correctly", {
result <- galah_call() |>
galah_identify("Litoria") |>
galah_filter(year == 2020)
expect_false(is.null(result$identify))
expect_false(is.null(result$filter))
})
test_that("galah_identify pipes correctly when taxa are partially returned", {
galah_config(verbose = FALSE)
result <- galah_call() |>
galah_identify("Litoria", "blarghy") |>
galah_filter(year == 2020)
expect_false(is.null(result$identify))
expect_false(is.null(result$filter))
galah_config(verbose = TRUE)
})
test_that("galah_identify warns when taxa are partially returned", {
skip_if_offline()
expect_message(
galah_call() |>
galah_identify("Litoria", "blarghy") |>
galah_filter(year == 2020) |>
count() |>
compute(),
cli::cli_text("Matched {.bold 1 of 2}")
)
})
test_that("galah_identify warns when identifiers are partially returned", {
skip_if_offline()
galah_config(run_checks = TRUE)
ids <- c("https://biodiversity.org.au/afd/taxa/0df99ece-1982-4605-a2b3-4fcb7660ee2b",
"https://id.biodiversity.org.au/node/apni/2910467",
"https://id.biodiversity.org.au/node/apni/291047") # wrong id
expect_message(
galah_call() |>
galah_identify(ids) |>
galah_filter(year == 2020) |>
count() |>
compute(),
cli::cli_text("Matched {.bold 2 of 3}")
)
expect_no_warning(
galah_identify(ids)
)
})
test_that("galah_identify truncates unmatched list of taxa at 3 ", {
skip_if_offline()
expect_message(
galah_call() |>
galah_identify("Litoria", "blarghy", "blorp", "florp", "skorp") |>
galah_filter(year == 2020) |>
count() |>
compute(),
c(
cli::cli_text("Matched {.bold 1 of 5} taxonomic search terms in selected atlas (Australia)."),
"!" = cli::cli_text("{.yellow 4 unmatched search term:}"),
cli::cli_text(format_error_bullets(c("{.yellow \"blarghy\", \"blorp\", \"florp\" + 1 more}")))
)
)
})
test_that("galah_identify errors for deprecated `search = FALSE` argument", {
skip_if_offline()
galah_config(run_checks = TRUE)
ids <- c("https://biodiversity.org.au/afd/taxa/0df99ece-1982-4605-a2b3-4fcb7660ee2b",
"https://id.biodiversity.org.au/node/apni/2910467",
"https://id.biodiversity.org.au/node/apni/291047",
"fred",
"bort") # wrong id
expect_error(
galah_call() |>
galah_identify(ids, search = FALSE) |>
galah_filter(year == 2020) |>
count() |>
collapse())
})
test_that("galah_identify warns for deprecated `search = TRUE` argument", {
skip_if_offline()
galah_config(run_checks = TRUE)
ids <- c("Litoria", "Crinia")
expect_warning(
galah_call() |>
galah_identify(ids, search = TRUE) |>
galah_filter(year == 2020) |>
count() |>
collapse())
})
## NOTE: Not certain if this is a necessary test
# cli::test_that_cli("Partial taxonomic match message theming", {
# testthat::local_edition(3)
# testthat::expect_snapshot(local({
# cli::cli_div(theme = list(span.bold = list("font-weight" = "bold"),
# span.yellow = list(color = "yellow")))
# c(
# cli::cli_text("Matched {.bold 2 of 3} taxonomic search terms in selected atlas (Australia)."),
# "!" = cli::cli_text("{.yellow 1 unmatched search term:}"),
# cli::cli_text(format_error_bullets(c("{.yellow \"https://id.biodiversity.org.au/node/apni/291047\"}")))
# )
# }))
# })
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