Nothing
# set verbose to off
galah_config(verbose = FALSE, run_checks = FALSE)
test_that("swapping to atlas = Portugal works", {
expect_message(galah_config(atlas = "Portugal"))
})
test_that("show_all(fields) works for Portugal", {
skip_if_offline()
x <- show_all(fields)
expect_gt(nrow(x), 1)
expect_true(inherits(x, c("tbl_df", "tbl", "data.frame")))
})
test_that("show_all(collections) works for Portugal", {
skip_if_offline()
x <- show_all(collections, limit = 10)
expect_lte(nrow(x), 10)
expect_true(inherits(x, c("tbl_df", "tbl", "data.frame")))
})
test_that("show_all(datasets) works for Portugal", {
skip_if_offline()
x <- show_all(datasets, limit = 10)
expect_lte(nrow(x), 10)
expect_true(inherits(x, c("tbl_df", "tbl", "data.frame")))
})
## FIXME: No data returned
test_that("show_all(providers) works for Portugal", {
skip_if_offline()
x <- show_all(providers, limit = 10)
expect_lte(nrow(x), 10)
expect_true(inherits(x, c("tbl_df", "tbl", "data.frame")))
})
test_that("show_all(reasons) works for Portugal", {
skip_if_offline()
x <- show_all(reasons)
expect_gt(nrow(x), 1)
expect_true(inherits(x, c("tbl_df", "tbl", "data.frame")))
})
test_that("show_all(assertions) works for Portugal", {
skip_if_offline()
x <- show_all(assertions)
expect_gt(nrow(x), 1)
expect_true(inherits(x, c("tbl_df", "tbl", "data.frame")))
})
test_that("show_all(profiles) fails for Portugal", {
expect_error(show_all(profiles))
})
test_that("show_all(lists) fails for Portugal", {
expect_error(show_all(lists))
})
test_that("search_all(fields) works for Portugal", {
skip_if_offline()
x <- search_all(fields, "year")
expect_gte(nrow(x), 1)
expect_true(inherits(x, c("tbl_df", "tbl", "data.frame")))
})
test_that("search_all(taxa) works for Portugal", {
skip_if_offline()
x <- search_all(taxa, "Mammalia")
expect_gte(nrow(x), 1)
expect_true(inherits(x, c("tbl_df", "tbl", "data.frame")))
})
test_that("show_values works for fields for Portugal", {
skip_if_offline()
x <- search_all(fields, "basis_of_record") |>
show_values()
expect_gte(nrow(x), 1)
expect_true(inherits(x, c("tbl_df", "tbl", "data.frame")))
})
test_that("atlas_counts works for Portugal", {
skip_if_offline()
expect_gt(atlas_counts()$count, 0)
expect_gt(atlas_counts(type = "species")$count, 0)
})
test_that("atlas_counts works with galah_identify for Portugal", {
skip_if_offline()
result <- galah_call() |>
identify("Mammalia") |>
count() |>
collect()
expect_gt(result$count, 1)
result2 <- galah_call() |>
filter(class == "Mammalia") |>
count() |>
collect()
expect_lt(
sqrt((result2$count - result$count)^2) / result$count,
0.1) # i.e. <1% margin of error
})
test_that("atlas_counts works with group_by for Portugal", {
skip_if_offline()
result <- galah_call() |>
filter(year >= 2000) |>
group_by(basis_of_record) |>
count() |>
collect()
expect_gt(nrow(result), 1)
expect_equal(names(result), c("basis_of_record", "count"))
})
test_that("atlas_occurrences returns error for Portugal", {
expect_error(atlas_occurrences(
filter = galah_filter(year == 2020)
))
})
galah_config(atlas = "Australia")
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