gamlss: Generalised Additive Models for Location Scale and Shape

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Functions for fitting, displaying and checking GAMLSS Models.

Author
Mikis Stasinopoulos [aut, cre, cph], Bob Rigby [aut], Vlasios Voudouris [ctb], Calliope Akantziliotou [ctb], Marco Enea [ctb], Daniil Kiose [ctb]
Date of publication
2016-11-21 12:01:45
Maintainer
Mikis Stasinopoulos <mikis.stasinopoulos@gamlss.org>
License
GPL-2 | GPL-3
Version
5.0-1
URLs

View on CRAN

Man pages

acfResid
ACF plot of the residuals
additive.fit
Implementing Backfitting in GAMLSS
bfp
Functions to fit fractional polynomials in GAMLSS
calibration
Calibrating centile curves
centiles
Plots the centile curves for a GAMLSS object
centiles.com
Comparing centiles from different GAMLSS models
centiles.pred
Creating predictive centiles values
centiles.split
Plots centile curves split by x for a GAMLSS object
coef.gamlss
Extract Model Coefficients in a GAMLSS fitted model
cs
Specify a Smoothing Cubic Spline Fit in a GAMLSS Formula
deviance.gamlss
Global Deviance of a GAMLSS model
dtop
Detrended transformed Owen's plot
edf
Effective degrees of freedom from gamlss model
findhyper
A function to select values of hyper-parameters in a GAMLSS...
fitDist
Fits Different Parametric 'gamlss.family' distributions to...
fitted.gamlss
Extract Fitted Values For A GAMLSS Model
fittedPlot
Plots The Fitted Values of a GAMLSS Model
formula.gamlss
Extract the Model Formula in a GAMLSS fitted model
gamlss
Generalized Additive Models for Location Scale and Shape
gamlss.control
Auxiliary for Controlling GAMLSS Fitting
gamlss.cs
Support for Function cs() and scs()
gamlss.fp
Support for Function fp()
gamlss.lo
Support for Function lo()
gamlssML
Maximum Likelihood estimation of a simple GAMLSS model
gamlss.package
The GAMLSS library and datasets
gamlss.ps
Support for Functions for smoothers
gamlss.random
Support for Functions random() and re()
gamlss.scope
Generate a Scope Argument for Stepwise GAMLSS
gamlssVGD
A Set of Functions for selecting Models using Validation or...
gen.likelihood
A function to generate the likelihood function from a GAMLSS...
getPEF
Getting the partial effect function from a continuous term in...
getSmo
Extracting Smoother information from a GAMLSS fitted object
glim.control
Auxiliary for Controlling the inner algorithm in a GAMLSS...
histDist
This function plots the histogram and a fitted (GAMLSS...
histSmo
Density estimation using the Poisson trick
IC
Gives the GAIC for a GAMLSS Object
lms
A function to fit LMS curves for centile estimation
lo
Specify a loess fit in a GAMLSS formula
loglogSurv
Log-Log Survival function plots for checking the tail...
lpred
Extract Linear Predictor Values and Standard Errors For A...
LR.test
Likelihood Ratio test for nested GAMLSS models
model.frame.gamlss
Extract a model.frame, a model matrix or terms from a GAMLSS...
par.plot
A function to plot parallel plot for repeated measurement...
pcat
Reduction for the Levels of a Factor.
pdf.plot
Plots Probability Distribution Functions for GAMLSS Family
plot2way
Function to plot two interaction in a GAMLSS model
plot.gamlss
Plot Residual Diagnostics for an GAMLSS Object
plot.histSmo
A Plotting Function for density estimator object histSmo
polyS
Auxiliary support for the GAMLSS
predict.gamlss
Extract Predictor Values and Standard Errors For New Data In...
print.gamlss
Prints a GAMLSS fitted model
prof.dev
Plotting the Profile Deviance for one of the Parameters in a...
prof.term
Plotting the Profile: deviance or information criterion for...
ps
P-Splines Fits in a GAMLSS Formula
Q.stats
A function to calculate the Q-statistics
quantSheets
Quantile Sheets
random
Specify a random intercept model in a GAMLSS formula
refit
Refit a GAMLSS model
residuals.gamlss
Extract Residuals from GAMLSS model
ri
Specify ridge or lasso Regression within a GAMLSS Formula
rqres.plot
Plotting Randomized Quantile Residuals
Rsq
Generalised (Pseudo) R-squared for GAMLSS models
rvcov
Robust Variance-Covariance matrix of the parameters from a...
stepGAIC
Choose a model by GAIC in a Stepwise Algorithm
summary.gamlss
Summarizes a GAMLSS fitted model
term.plot
Plot regression terms for a specified parameter of a fitted...
update.gamlss
Update and Re-fit a GAMLSS Model
VC.test
Vuong and Clarke tests
wp
Worm plot
z.scores
Z-scores for lms objects

Files in this package

gamlss
gamlss/inst
gamlss/inst/CITATION
gamlss/inst/doc
gamlss/inst/doc/NEWS.txt
gamlss/inst/doc/gamlss-manual.pdf
gamlss/src
gamlss/src/genD.h
gamlss/src/genD.c
gamlss/NAMESPACE
gamlss/R
gamlss/R/predict.gamlss.R
gamlss/R/POLY.R
gamlss/R/re_gamlss_lme.R
gamlss/R/gen-Likelihood.R
gamlss/R/plot2way.R
gamlss/R/logLik.R
gamlss/R/stepTGDAll-A-parallel.R
gamlss/R/random.R
gamlss/R/extra.R
gamlss/R/term.plot-new.R
gamlss/R/centilesPLOT.R
gamlss/R/plot.R
gamlss/R/HistDist-03-10-13.R
gamlss/R/centilescom.R
gamlss/R/pb_new.R
gamlss/R/PROFILE_new_19-08-12.R
gamlss/R/quantSheets.R
gamlss/R/VuongClarkTest.R
gamlss/R/cy.R
gamlss/R/edf.R
gamlss/R/LR-test-12-06-2013.R
gamlss/R/p-categorical.R
gamlss/R/dtop.R
gamlss/R/gamlss.R
gamlss/R/update.R
gamlss/R/pdfplot.R
gamlss/R/gamlssVGD.R
gamlss/R/pvc.R
gamlss/R/centile-pred.R
gamlss/R/add.r
gamlss/R/get-K-rvcov-16-06-2913.R
gamlss/R/lpred.R
gamlss/R/stepGAIC-03-10-13..R
gamlss/R/FitTail.R
gamlss/R/stepTGD.R
gamlss/R/fracpoly.R
gamlss/R/powerpoly.R
gamlss/R/pb_goingtozero.R
gamlss/R/confint-gamlss-03-10-13.R
gamlss/R/rqres.R
gamlss/R/print.R
gamlss/R/qstats.R
gamlss/R/lo_new.R
gamlss/R/pb_03-02-2014.R
gamlss/R/getPEF.R
gamlss/R/fitDist-17-05-13.R
gamlss/R/getSmo-18-6-13.R
gamlss/R/rqresplot03-10-13.R
gamlss/R/pbc.R
gamlss/R/wp-18-5-13.R
gamlss/R/acfResid.R
gamlss/R/histSmo.R
gamlss/R/pbm_new.R
gamlss/R/par_plot-21-5-13.R
gamlss/R/ridge.R
gamlss/R/DropAddStepGAIC-Parallel.R
gamlss/R/predictAll.R
gamlss/R/SUMMARY.R
gamlss/R/findhyper-23-05-13.R
gamlss/R/PS.R
gamlss/R/profterm_18_05_13.R
gamlss/R/centilesFan.R
gamlss/R/gamlssML-31-10-13.R
gamlss/R/ri.R
gamlss/R/stepGAICAll-A-parallel.R
gamlss/R/stepGAICAll-B-Parallel.R
gamlss/R/fitted-plot.R
gamlss/R/lms.R
gamlss/R/cubicSplines-10-08-12.R
gamlss/R/vcov-gamlss.R
gamlss/MD5
gamlss/DESCRIPTION
gamlss/man
gamlss/man/plot.gamlss.Rd
gamlss/man/bfp.Rd
gamlss/man/cs.Rd
gamlss/man/gamlss.fp.Rd
gamlss/man/getSmo.Rd
gamlss/man/edf.Rd
gamlss/man/histDist.Rd
gamlss/man/findhyper.Rd
gamlss/man/lpred.Rd
gamlss/man/polyS.Rd
gamlss/man/residuals.gamlss.Rd
gamlss/man/term.plot.Rd
gamlss/man/deviance.gamlss.Rd
gamlss/man/rvcov.Rd
gamlss/man/gamlssML.Rd
gamlss/man/fittedPlot.Rd
gamlss/man/VC.test.Rd
gamlss/man/update.gamlss.Rd
gamlss/man/gamlss.Rd
gamlss/man/Q.stats.Rd
gamlss/man/gamlss.package.Rd
gamlss/man/formula.gamlss.Rd
gamlss/man/summary.gamlss.Rd
gamlss/man/lo.Rd
gamlss/man/gen.likelihood.Rd
gamlss/man/ps.Rd
gamlss/man/plot2way.Rd
gamlss/man/calibration.Rd
gamlss/man/z.scores.Rd
gamlss/man/gamlss.cs.Rd
gamlss/man/print.gamlss.Rd
gamlss/man/centiles.Rd
gamlss/man/gamlss.scope.Rd
gamlss/man/pdf.plot.Rd
gamlss/man/dtop.Rd
gamlss/man/fitDist.Rd
gamlss/man/predict.gamlss.Rd
gamlss/man/rqres.plot.Rd
gamlss/man/gamlss.lo.Rd
gamlss/man/additive.fit.Rd
gamlss/man/par.plot.Rd
gamlss/man/centiles.split.Rd
gamlss/man/ri.Rd
gamlss/man/centiles.com.Rd
gamlss/man/random.Rd
gamlss/man/getPEF.Rd
gamlss/man/quantSheets.Rd
gamlss/man/acfResid.Rd
gamlss/man/stepGAIC.Rd
gamlss/man/IC.Rd
gamlss/man/gamlss.control.Rd
gamlss/man/glim.control.Rd
gamlss/man/histSmo.Rd
gamlss/man/model.frame.gamlss.Rd
gamlss/man/refit.Rd
gamlss/man/gamlss.ps.Rd
gamlss/man/fitted.gamlss.Rd
gamlss/man/lms.Rd
gamlss/man/plot.histSmo.Rd
gamlss/man/prof.term.Rd
gamlss/man/gamlss.random.Rd
gamlss/man/Rsq.Rd
gamlss/man/centiles.pred.Rd
gamlss/man/LR.test.Rd
gamlss/man/pcat.Rd
gamlss/man/loglogSurv.Rd
gamlss/man/coef.gamlss.Rd
gamlss/man/prof.dev.Rd
gamlss/man/wp.Rd
gamlss/man/gamlssVGD.Rd