API for gen3sis
General Engine for Eco-Evolutionary Simulations
| Global functions | |
|---|---|
| Tdbscan | Source code |
| Tdbscan_variable | Source code |
| apply_ecology | Man page Source code |
| apply_evolution | Man page Source code |
| call_main_observer | Source code |
| color_richness | Man page |
| color_richness_non_CVDCBP | Man page |
| compile_landscapes | Source code |
| complete_config | Source code |
| compress_divergence | Source code |
| conc | Source code |
| conditional_plot | Source code |
| consolidate_divergence | Source code |
| create_ancestor_species | Man page Source code |
| create_directories | Source code |
| create_empty_config | Source code |
| create_input_config | Man page Source code |
| create_input_landscape | Man page Source code |
| create_landscape | Source code |
| create_species | Man page Source code |
| create_species_from_existing | Source code |
| decompress_divergence | Source code |
| disperse | Source code |
| disperse_species | Source code |
| epsN | Source code |
| evolution_mode_none | Man page Source code |
| evolve | Source code |
| gen3sis | Man page |
| getEntities | Source code |
| get_dispersal_values | Man page Source code |
| get_distance_matrix | Source code |
| get_divergence_factor | Man page Source code |
| get_divergence_matrix | Man page Source code |
| get_geo_richness | Man page Source code |
| get_habitable_mask | Source code |
| get_local_distances | Source code |
| habitat_extents | Source code |
| init_attribute_ancestor_distribution | Source code |
| init_simulation | Source code |
| init_summary_statistics | Source code |
| is_any_f | Source code |
| limit_divergence_to_cells | Source code |
| limit_species_to_cells | Source code |
| loop_dispersal | Source code |
| loop_ecology | Source code |
| loop_evolution | Source code |
| loop_setup_geo_dist_m_ti | Source code |
| loop_speciation | Source code |
| make_summary | Source code |
| min_max_traits | Source code |
| percentage_inhabited | Source code |
| percentage_species_alive | Source code |
| plot_landscape | Man page Source code |
| plot_landscape_overview | Man page Source code |
| plot_ranges | Man page Source code |
| plot_raster_multiple | Man page Source code |
| plot_raster_single | Man page Source code |
| plot_richness | Man page Source code |
| plot_species_abundance | Man page Source code |
| plot_species_presence | Man page Source code |
| plot_summary | Man page Source code |
| populate_config | Source code |
| populate_settings_list | Source code |
| prepare_directories | Man page Source code |
| restore_state | Source code |
| restrict_species | Source code |
| run_simulation | Man page Source code |
| save_abundance | Man page Source code |
| save_divergence | Man page Source code |
| save_ecogengeo | Source code |
| save_extract | Source code |
| save_landscape | Man page Source code |
| save_occupancy | Man page Source code |
| save_phylogeny | Man page Source code |
| save_richness | Man page Source code |
| save_species | Man page Source code |
| save_traits | Man page Source code |
| save_val | Source code |
| select_habitable_hab | Source code |
| setup_distance_matrix | Source code |
| setup_inputs | Source code |
| setup_landscape | Source code |
| setup_variables | Source code |
| skeleton_config | Man page Source code |
| stack_landscapes | Source code |
| summary.gen3sis_species | Source code |
| trait_ranges | Source code |
| update.phylo | Source code |
| update1.n_sp.all_geo_sp_ti | Source code |
| update2.n_sp_alive.geo_sp_ti | Source code |
| update_divergence | Source code |
| update_extinction_times | Source code |
| update_species_from_abundance | Source code |
| update_summary_statistics | Source code |
| verify_config | Man page Source code |
| write_config_skeleton | Man page Source code |
| write_nex | Source code |
| write_runtime_statisitics | Source code |
