API for gen3sis
General Engine for Eco-Evolutionary Simulations

Global functions
Tdbscan Source code
Tdbscan_variable Source code
apply_ecology Man page Source code
apply_evolution Man page Source code
call_main_observer Source code
color_richness Man page
compile_landscapes Source code
complete_config Source code
compress_divergence Source code
conc Source code
conditional_plot Source code
consolidate_divergence Source code
create_ancestor_species Man page Source code
create_directories Source code
create_empty_config Source code
create_input_config Man page Source code
create_input_landscape Man page Source code
create_landscape Source code
create_species Man page Source code
create_species_from_existing Source code
decompress_divergence Source code
disperse Source code
disperse_species Source code
epsN Source code
evolution_mode_none Man page Source code
evolve Source code
gen3sis Man page
getEntities Source code
get_dispersal_values Man page Source code
get_distance_matrix Source code
get_divergence_factor Man page Source code
get_divergence_matrix Man page Source code
get_eco_by_sp Source code
get_geo_richness Man page Source code
get_habitable_mask Source code
get_local_distances Source code
habitat_extents Source code
init_attribute_ancestor_distribution Source code
init_simulation Source code
init_summary_statistics Source code
is_any_f Source code
limit_divergence_to_cells Source code
limit_species_to_cells Source code
loop_dispersal Source code
loop_ecology Source code
loop_evolution Source code
loop_setup_geo_dist_m_ti Source code
loop_speciation Source code
make_summary Source code
min_max_traits Source code
percentage_inhabited Source code
percentage_species_alive Source code
plot_landscape Man page Source code
plot_landscape_overview Man page Source code
plot_raster_multiple Man page Source code
plot_raster_single Man page Source code
plot_richness Man page Source code
plot_species_presence Man page Source code
plot_summary Man page Source code
populate_config Source code
populate_settings_list Source code
prepare_directories Man page Source code
restore_state Source code
restrict_species Source code
run_simulation Man page Source code
save_abundance Man page Source code
save_divergence Man page Source code
save_ecogengeo Source code
save_extract Source code
save_landscape Man page Source code
save_occupancy Man page Source code
save_phylogeny Man page Source code
save_richness Man page Source code
save_species Man page Source code
save_traits Man page Source code
save_val Source code
select_habitable_hab Source code
setup_distance_matrix Source code
setup_inputs Source code
setup_landscape Source code
setup_variables Source code
skeleton_config Man page Source code
stack_landscapes Source code
summary.gen3sis_species Source code
trait_ranges Source code
update.phylo Source code
update1.n_sp.all_geo_sp_ti Source code
update2.n_sp_alive.geo_sp_ti Source code
update_divergence Source code
update_loop_steps_variable Source code
update_species_from_abundance Source code
update_summary_statistics Source code
verify_config Man page Source code
write_config_skeleton Man page Source code
write_nex Source code
write_runtime_statisitics Source code
gen3sis documentation built on July 10, 2020, 5:13 p.m.