Files in gen3sis
General Engine for Eco-Evolutionary Simulations

MD5
README.md
NAMESPACE
DESCRIPTION
build/vignette.rds
src/RcppExports.cpp
src/RcppFunctions.cpp
src/distances.cpp
R/skeleton_config.R R/evolution.R R/divergence.R R/internal_functions.R R/ecology.R R/input_creation.R R/RcppExports.R R/config_handling.R R/plotting_functions.R R/dispersal.R R/gen3sis_main.R R/observations.R R/zzz.R R/speciation.R R/gen3sis_landscape.R R/state_handling.R R/gen3sis_species.R R/skeleton_landscape_metadata.R R/simulation.R R/summary_statistics.R vignettes/create_input_landscape.Rmd vignettes/design_landscape.Rmd vignettes/introduction.Rmd vignettes/create_config.Rmd man/get_dispersal_values.Rd man/verify_config.Rd man/create_input_config.Rd man/plot_species_presence.Rd man/color_richness.Rd man/plot_landscape_overview.Rd man/plot_summary.Rd man/save_species.Rd man/get_geo_richness.Rd man/get_divergence_matrix.Rd man/apply_ecology.Rd man/plot_raster_multiple.Rd man/apply_evolution.Rd man/plot_richness.Rd man/save_phylogeny.Rd man/save_abundance.Rd man/skeleton_config.Rd man/write_config_skeleton.Rd man/save_divergence.Rd man/save_traits.Rd man/gen3sis.Rd man/save_occupancy.Rd man/evolution_mode_none.Rd man/get_divergence_factor.Rd man/plot_landscape.Rd man/prepare_directories.Rd man/save_richness.Rd man/create_ancestor_species.Rd man/save_landscape.Rd man/create_input_landscape.Rd man/run_simulation.Rd man/plot_raster_single.Rd man/create_species.Rd tests/testthat.R tests/testthat/test-distances.R tests/testthat/test-config_handling.R tests/testthat/test-gen3sis_main.R tests/testthat/test-input_creation.R
inst/doc/introduction.html
inst/doc/design_landscape.html
inst/doc/create_input_landscape.html
inst/doc/design_landscape.R
inst/doc/create_config.html
inst/doc/introduction.R inst/doc/create_config.R inst/doc/create_input_landscape.Rmd inst/doc/design_landscape.Rmd inst/doc/create_input_landscape.R inst/doc/introduction.Rmd inst/doc/create_config.Rmd inst/extdata/CaseStudy1/config/config_fast.R inst/extdata/CaseStudy1/config/config_rte.R
inst/extdata/CaseStudy1/landscape/case_study_landscape.gif
inst/extdata/CaseStudy1/landscape/METADATA.txt
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inst/extdata/WorldCenter/config/config_worldcenter.R
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inst/extdata/WorldCenter/output/config_worldcenter/runtime_information.txt
inst/extdata/WorldCenter/output/config_worldcenter/starting_richness.pdf
inst/extdata/WorldCenter/output/config_worldcenter/phy.nex
inst/extdata/WorldCenter/output/config_worldcenter/phy.txt
inst/extdata/WorldCenter/output/config_worldcenter/sgen3sis.rds
inst/extdata/WorldCenter/output/config_worldcenter/species/species_t_300.rds
inst/extdata/WorldCenter/output/config_worldcenter/species/species_t_150.rds
inst/extdata/WorldCenter/output/config_worldcenter/species/species_t_0.rds
inst/extdata/WorldCenter/output/config_worldcenter/landscapes/landscape_t_0.rds
inst/extdata/WorldCenter/output/config_worldcenter/landscapes/landscape_t_300.rds
inst/extdata/WorldCenter/output/config_worldcenter/landscapes/landscape_t_150.rds
inst/extdata/CostFunctionExamples/cost_function_water/landscapes.rds
inst/extdata/CostFunctionExamples/cost_function_water/distances_local/distances_local_0.rds
inst/extdata/CostFunctionExamples/cost_function_water/distances_full/distances_full_0.rds
inst/extdata/CostFunctionExamples/cost_function_null/landscapes.rds
inst/extdata/CostFunctionExamples/cost_function_null/distances_local/distances_local_0.rds
inst/extdata/CostFunctionExamples/cost_function_null/distances_full/distances_full_0.rds
inst/extdata/InputRasters/WorldCenter/area_rasters.gri
inst/extdata/InputRasters/WorldCenter/aridity_rasters.gri
inst/extdata/InputRasters/WorldCenter/temp_rasters.grd
inst/extdata/InputRasters/WorldCenter/temp_rasters.gri
inst/extdata/InputRasters/WorldCenter/area_rasters.grd
inst/extdata/InputRasters/WorldCenter/aridity_rasters.grd
inst/extdata/EmptyConfig/config_empty.R inst/examples/create_input_config_help.R inst/examples/plot_richness_help.R inst/examples/plot_raster_single_help.R inst/examples/plot_summary_help.R inst/examples/save_phylogeny_help.R inst/examples/get_geo_richness_help.R inst/examples/get_divergence_matrix_help.R inst/examples/save_divergence_help.R inst/examples/verify_config_help.R inst/examples/save_occupancy_help.R inst/examples/save_traits_help.R inst/examples/create_species_help.R inst/examples/write_config_skeleton_help.R inst/examples/save_richness_help.R inst/examples/create_input_landscape_help.R inst/examples/plot_species_presence_help.R inst/examples/prepare_directories_help.R inst/examples/save_species_help.R inst/examples/run_simulation_help.R inst/examples/save_abundance_help.R inst/examples/save_landscape_help.R
gen3sis documentation built on July 10, 2020, 5:13 p.m.