Description Usage Arguments Details Author(s) See Also Examples
For all files in dir.in
directory that end with ending.ped
and contain keyword key.ped
, and all files ending with ending.map
and contain keyword key.map
, runs the converter pre1.plink2mach
. This will re-format all the files from Plink format to MaCH input format.
1 2 | pre1.plink2mach.batch(dir.in, dir.out, ending.ped = ".ped", ending.map = ".map",
key.ped = "", key.map = "")
|
dir.in |
The name of directory where all the files with |
dir.out |
The name of directory to which output files .ped and .dat should be saved to. |
ending.ped |
The ending of the filenames that contain pedegree data in Plink format. See format of .ped file in |
ending.map |
The ending of the filenames that contain SNP ID information. See format of .map file in |
key.ped |
Any keyword in the Plink pedegree file names to uniquely distinguish them from other files in the |
key.map |
Any keyword in the .map file names to uniquely distinguish them from other files in the |
The input file formats of .ped and .map files are described in pre1.plink2mach
.
Olia Vesselova
pre1.plink2mach
, pre0.dir.create
,
pre2.remove.genos
, pre2.remove.genos.batch
1 | print("See the demo 'gendemo'.")
|
[1] "See the demo 'gendemo'."
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