pre4.combine.case.control: Combine CASE and CONTROL files

In genMOSSplus: Application of MOSS algorithm to genome-wide association study (GWAS)

Description

Combines CASE and CONTROL files into one file, and appends disease status as the last column. The disease status is encoded as 1 for CASE and 0 for CONTROL.

Usage

pre4.combine.case.control(case.file, control.file, dir.file, name.out, 
dir.out = dir.file, separ = " ")

Arguments

case.file	The name of the CASE file.
control.file	The name of the CONTROL file.
dir.file	The name of directory where CASE and CONTROL input files can be found.
name.out	The desired name for the output file.
dir.out	The name of directory to which output file should be written.
separ	The separator used in the CASE and CONTROL input files.

Details

The function combines CASE and CONTROL together, attaching disease status as the last column: 1 for CASE and 0 for CONTROL. There will be two output files:

 - <dir.out>/<name.out> - the file containing both CASE and CONTROL values, 
     with the disease status as the last column.
 - <dir.out>/<all.dat> - also will copy over ALL the files ending with ".dat" 
     that exist in \code{\var{dir.file}}.

Author(s)

Olia Vesselova

See Also

pre3.call.mach, pre3.call.mach.batch, pre4.combine.case.control.batch, pre5.genos2numeric, pre5.genos2numeric.batch

Examples

print("See the demo 'gendemo'.")

Example output

[1] "See the demo 'gendemo'."

genMOSSplus documentation built on May 1, 2019, 10:31 p.m.