geneHapR-package: Gene Haplotype Statistics, Pheno Associations, and...

In geneHapR: Gene Haplotype Statistics, Phenotype Association and Visualization

Gene Haplotype Statistics, Pheno Associations, and Visualization

Description

This packages provides a suite for gene(s) haplotype analysis, phenotypes association and visualization of geography distribution.

Details

The haplotype analysis requires sequences such as fasta which could be import by import_vcf

A complete list of functions can be displayed with: library(help = 'geneHapR').

Vignettes (documentation) can be listed with: browseVignettes('geneHapR').

Several small example datasets are included in 'geneHapR'. vcf and seqs provide a data set for test of seq2hap() and seqs2hap(). gff provide a data set for visualization mutations on gene model. pheno provide a data set for phenotype comparison between haplotypes. AccINFO provide a data provide accessions information for pie plot in hapNet visualization, and information for geography distrbution.

Author(s)

Maintainer: Zhang Renliang [e-mail]

Authors:

• Jia Guanqing [e-mail]

See Also

More documentation for 'geneHapR' could be found at repos under gitee

geneHapR documentation built on May 29, 2024, 11:59 a.m.