getGeneRanges: Get Gene Ranges

In geneHapR: Gene Haplotype Statistics, Phenotype Association and Visualization

Get Gene Ranges

Description

Get Gene Ranges

Usage

getGeneRanges(gff= gff,
             geneID = geneID,
             type = type,
             gffTermContaingeneID = "Parent")

Arguments

gff	imported gff
geneID	target geneID
type	vector consist with one or more types in gff
gffTermContaingeneID	which term contains the geneID in your gff, defalt is Parent

Value

GRanges

Examples

data("geneHapR_test")
geneRanges <- getGeneRanges(gff = gff,
                            geneID = "test1G0387",
                            type = "CDS",
                            gffTermContaingeneID = "Parent")

geneHapR documentation built on May 29, 2024, 11:59 a.m.