hapVsPhenoPerSite | R Documentation |
Comparie phenotype site by site.
hapVsPhenoPerSite(
hap,
pheno,
phenoName,
sitePOS,
fileName,
fileType = NULL,
freq.min = 5,
...
)
hap |
an R object of hapresult class |
pheno , phenoName |
pheno, a data.frame contains the phenotypes; Only one phenotype name is required. |
sitePOS |
the coordinate of site |
fileName , fileType |
file name and file type will be needed for saving result, file type could be one of "png, tiff, jpg" |
freq.min |
miner allies frequency less than freq.min will not be skipped |
... |
addtional params will be passed to plot saving function like |
data("geneHapR_test")
hapVsPhenoPerSite(hapResult, pheno, sitePOS = "4300")
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